miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13456 3' -45.2 NC_003409.1 + 132462 0.83 0.512919
Target:  5'- cAGUGCCAGCGugGaGGGGUCAg -3'
miRNA:   3'- -UCGCGGUCGUugUaCCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 46867 0.67 0.999445
Target:  5'- uGGCuGgCGGCgAGCGUGGGAUa- -3'
miRNA:   3'- -UCG-CgGUCG-UUGUACCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 82833 0.67 0.999564
Target:  5'- uGCGCCauGGUGGCggGGGAUg- -3'
miRNA:   3'- uCGCGG--UCGUUGuaCCCUAgu -5'
13456 3' -45.2 NC_003409.1 + 21563 0.66 0.999737
Target:  5'- cGUGCCuGCcaaggaGUGGGAUCu -3'
miRNA:   3'- uCGCGGuCGuug---UACCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 115614 0.71 0.985572
Target:  5'- uGGUGUCuguaaucuGGCAGCAUGGGGUgGg -3'
miRNA:   3'- -UCGCGG--------UCGUUGUACCCUAgU- -5'
13456 3' -45.2 NC_003409.1 + 94258 0.7 0.991861
Target:  5'- cGUGCCAGUGGgGUuGGGGUCc -3'
miRNA:   3'- uCGCGGUCGUUgUA-CCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 12500 0.69 0.994961
Target:  5'- aGGC-CCAGUAGCAUGcGGGUg- -3'
miRNA:   3'- -UCGcGGUCGUUGUAC-CCUAgu -5'
13456 3' -45.2 NC_003409.1 + 133751 0.69 0.994961
Target:  5'- uGUGCCAGacaGGCGUucGGGAUCc -3'
miRNA:   3'- uCGCGGUCg--UUGUA--CCCUAGu -5'
13456 3' -45.2 NC_003409.1 + 49678 0.69 0.997026
Target:  5'- gAGCGCCAGCcaGACgGUGGuGUCc -3'
miRNA:   3'- -UCGCGGUCG--UUG-UACCcUAGu -5'
13456 3' -45.2 NC_003409.1 + 23485 0.67 0.999298
Target:  5'- cGgGCCGGCGGaccaAUGGGAg-- -3'
miRNA:   3'- uCgCGGUCGUUg---UACCCUagu -5'
13456 3' -45.2 NC_003409.1 + 104005 0.68 0.998645
Target:  5'- aGGCcuGCCAGCGucaGUGGGA-CAa -3'
miRNA:   3'- -UCG--CGGUCGUug-UACCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 50062 0.69 0.996435
Target:  5'- aGGCGuCCGGUAcugGCGUGGGcgCc -3'
miRNA:   3'- -UCGC-GGUCGU---UGUACCCuaGu -5'
13456 3' -45.2 NC_003409.1 + 119820 0.76 0.844374
Target:  5'- gAGCGcCCGGguGCAcGGGGUCAc -3'
miRNA:   3'- -UCGC-GGUCguUGUaCCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 24210 0.68 0.998645
Target:  5'- cGCGCCAGCG--GUGGGc--- -3'
miRNA:   3'- uCGCGGUCGUugUACCCuagu -5'
13456 3' -45.2 NC_003409.1 + 128058 0.74 0.922191
Target:  5'- cGGUGCCAGCAACc-GGGAgCAc -3'
miRNA:   3'- -UCGCGGUCGUUGuaCCCUaGU- -5'
13456 3' -45.2 NC_003409.1 + 105225 0.69 0.996435
Target:  5'- cAGCGCUguGGCG-CcUGGGGUCGc -3'
miRNA:   3'- -UCGCGG--UCGUuGuACCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 88344 0.67 0.99912
Target:  5'- aGGCGCCAucGgGGCugaGGGGUCGc -3'
miRNA:   3'- -UCGCGGU--CgUUGua-CCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 132308 0.67 0.999564
Target:  5'- uGGCGCC-GUGGCGUGGaGUCc -3'
miRNA:   3'- -UCGCGGuCGUUGUACCcUAGu -5'
13456 3' -45.2 NC_003409.1 + 55242 0.73 0.958717
Target:  5'- cAGCaGCCauAGCAACGgaagGGGGUCGu -3'
miRNA:   3'- -UCG-CGG--UCGUUGUa---CCCUAGU- -5'
13456 3' -45.2 NC_003409.1 + 109146 0.7 0.991861
Target:  5'- cGCagGCCGGgcGCGUGGGGUCGa -3'
miRNA:   3'- uCG--CGGUCguUGUACCCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.