Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 108639 | 0.66 | 1 |
Target: 5'- -cCGGCcaGGCCCaGGAGACCAuaUCAc -3' miRNA: 3'- gaGUUG--UCGGG-CUUUUGGU--AGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 109943 | 0.69 | 0.999955 |
Target: 5'- -gCAGCAGUCCaGAAGCCGUg- -3' miRNA: 3'- gaGUUGUCGGGcUUUUGGUAgu -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 110684 | 0.67 | 0.999995 |
Target: 5'- -aCAGCAGCC-GAAGAUUGUCGc -3' miRNA: 3'- gaGUUGUCGGgCUUUUGGUAGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 111733 | 0.67 | 0.999998 |
Target: 5'- gUUAGCAGUCCGggGuCCAc-- -3' miRNA: 3'- gAGUUGUCGGGCuuUuGGUagu -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 112140 | 0.69 | 0.999917 |
Target: 5'- -cCGGCAccacGCCCGggGGCCAggacUCAc -3' miRNA: 3'- gaGUUGU----CGGGCuuUUGGU----AGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 120379 | 0.67 | 0.999995 |
Target: 5'- gCUC-ACGGCCCGuguGCCAg-- -3' miRNA: 3'- -GAGuUGUCGGGCuuuUGGUagu -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 120644 | 1.07 | 0.055217 |
Target: 5'- gCUCAACAGCCCGAAAACCAUCAg -3' miRNA: 3'- -GAGUUGUCGGGCUUUUGGUAGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 121186 | 0.66 | 1 |
Target: 5'- --aAAgGGUCCGAAAACCA-CAa -3' miRNA: 3'- gagUUgUCGGGCUUUUGGUaGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 128806 | 0.67 | 0.999995 |
Target: 5'- aUgGACAcCCCGuGAACCGUCGu -3' miRNA: 3'- gAgUUGUcGGGCuUUUGGUAGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 128886 | 0.68 | 0.999968 |
Target: 5'- uUUuACAGCCCGAugGCCcuUCAg -3' miRNA: 3'- gAGuUGUCGGGCUuuUGGu-AGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 129058 | 0.75 | 0.988978 |
Target: 5'- aCUCAAggaGGCCUGAAgGGCCAUCGg -3' miRNA: 3'- -GAGUUg--UCGGGCUU-UUGGUAGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 131466 | 0.67 | 0.999995 |
Target: 5'- cCUgGGCAGCCUaAGGGCCAUg- -3' miRNA: 3'- -GAgUUGUCGGGcUUUUGGUAgu -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 132561 | 0.69 | 0.999917 |
Target: 5'- --aGAguGCCCGAcacgguggAGGCCAUCAc -3' miRNA: 3'- gagUUguCGGGCU--------UUUGGUAGU- -5' |
|||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 134497 | 0.66 | 0.999999 |
Target: 5'- uCUCGGCAGCCUGAcuACa---- -3' miRNA: 3'- -GAGUUGUCGGGCUuuUGguagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home