miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 3' -42.5 NC_003409.1 + 68646 0.66 0.999999
Target:  5'- ---uACAGCCCuGGAAccgagGCCAUCGc -3'
miRNA:   3'- gaguUGUCGGG-CUUU-----UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 69520 0.69 0.999917
Target:  5'- -gCAGCAGCCgGAGAGCgCAcgCAg -3'
miRNA:   3'- gaGUUGUCGGgCUUUUG-GUa-GU- -5'
13457 3' -42.5 NC_003409.1 + 74393 0.68 0.999964
Target:  5'- uUCcuuCGGCCCGGAGucuccggcggauauACCGUCAc -3'
miRNA:   3'- gAGuu-GUCGGGCUUU--------------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 76020 0.69 0.999939
Target:  5'- --uGACGGCCCuaGAGGCCGUCu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGu -5'
13457 3' -42.5 NC_003409.1 + 76177 0.67 0.999996
Target:  5'- --aGACGGCCUcuAGGGCCGUCAu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 78292 0.67 0.999998
Target:  5'- ---cGCAGCCCGguAGCCG-CAu -3'
miRNA:   3'- gaguUGUCGGGCuuUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 79415 0.66 1
Target:  5'- -gCGACAGCgCCG-AGACgAUCGc -3'
miRNA:   3'- gaGUUGUCG-GGCuUUUGgUAGU- -5'
13457 3' -42.5 NC_003409.1 + 80084 0.67 0.999995
Target:  5'- --aGACAGUCUGGAGacggagGCCAUCGa -3'
miRNA:   3'- gagUUGUCGGGCUUU------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 84282 0.75 0.981077
Target:  5'- uUCGACAGCCCGAcuGGCUugucGUCAg -3'
miRNA:   3'- gAGUUGUCGGGCUu-UUGG----UAGU- -5'
13457 3' -42.5 NC_003409.1 + 84533 0.67 0.999998
Target:  5'- -aCGACGGCagagggucaGGAGGCCGUCAu -3'
miRNA:   3'- gaGUUGUCGgg-------CUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 87544 0.66 0.999999
Target:  5'- -cCAGCGcccccgcGCCCGGguaugcgAAACCAUCAu -3'
miRNA:   3'- gaGUUGU-------CGGGCU-------UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 89465 0.68 0.999984
Target:  5'- aCUUAaccACAGCCCGucAAACCA-CAg -3'
miRNA:   3'- -GAGU---UGUCGGGCu-UUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 90169 0.66 1
Target:  5'- -gCGGCAGUCC-AGcACCAUCAu -3'
miRNA:   3'- gaGUUGUCGGGcUUuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 90490 0.68 0.999989
Target:  5'- aUC-ACAGCCCGGAGGCgA-CAc -3'
miRNA:   3'- gAGuUGUCGGGCUUUUGgUaGU- -5'
13457 3' -42.5 NC_003409.1 + 91019 0.71 0.999454
Target:  5'- gUguACGGCUCGAGAAgCAUCGg -3'
miRNA:   3'- gAguUGUCGGGCUUUUgGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 94339 0.72 0.997542
Target:  5'- uUCcGCAGCCCGAcAACCGg-- -3'
miRNA:   3'- gAGuUGUCGGGCUuUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 94732 0.79 0.920926
Target:  5'- gUCAGCAGgCCGAucgAGGCCGUCGa -3'
miRNA:   3'- gAGUUGUCgGGCU---UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 95609 0.66 1
Target:  5'- -cCAGCGGCCCaaaGGGACCAa-- -3'
miRNA:   3'- gaGUUGUCGGGc--UUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 107084 0.7 0.999744
Target:  5'- aUCAACucuGGCCaCGAccGCCAUCGa -3'
miRNA:   3'- gAGUUG---UCGG-GCUuuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 108313 0.68 0.999984
Target:  5'- uCUCGAgggacuguccUGGCUCGAgcAGACCAUCAa -3'
miRNA:   3'- -GAGUU----------GUCGGGCU--UUUGGUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.