miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 3' -42.5 NC_003409.1 + 11943 0.66 0.999999
Target:  5'- -gCAGCGcuGCCUGAAAACguUCAc -3'
miRNA:   3'- gaGUUGU--CGGGCUUUUGguAGU- -5'
13457 3' -42.5 NC_003409.1 + 18340 0.76 0.972813
Target:  5'- gUCGACAGCCCgcgggaaucGAAAGCCAUg- -3'
miRNA:   3'- gAGUUGUCGGG---------CUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 21129 0.66 1
Target:  5'- cCUCAACucgcaguGCUCGGAGACCu--- -3'
miRNA:   3'- -GAGUUGu------CGGGCUUUUGGuagu -5'
13457 3' -42.5 NC_003409.1 + 22568 0.66 1
Target:  5'- -cCAGCGGUCCugccACCAUCAu -3'
miRNA:   3'- gaGUUGUCGGGcuuuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 25930 0.68 0.999977
Target:  5'- -aCGGgGGCCCGAAcGACCGUg- -3'
miRNA:   3'- gaGUUgUCGGGCUU-UUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 27216 0.67 0.999997
Target:  5'- -cCAACuGCUCGAGGcgacaacGCCAUCGu -3'
miRNA:   3'- gaGUUGuCGGGCUUU-------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 27415 0.66 1
Target:  5'- -gCAACAGUCUaaaGAAAACCGUa- -3'
miRNA:   3'- gaGUUGUCGGG---CUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 27651 0.71 0.999131
Target:  5'- -cCAAC-GCCCGGAAACCG-CAu -3'
miRNA:   3'- gaGUUGuCGGGCUUUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 28873 0.66 0.999999
Target:  5'- aUCGGCGGCaccaaUGAAAACCAg-- -3'
miRNA:   3'- gAGUUGUCGg----GCUUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 31086 0.69 0.999955
Target:  5'- -aCAACAgGCaCCGGAGACCAcgCAu -3'
miRNA:   3'- gaGUUGU-CG-GGCUUUUGGUa-GU- -5'
13457 3' -42.5 NC_003409.1 + 32052 0.7 0.999804
Target:  5'- --aGACAGcCCCGGGAGCCAc-- -3'
miRNA:   3'- gagUUGUC-GGGCUUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 33117 0.75 0.988978
Target:  5'- --aGAC-GCCCGGAGACUAUCAg -3'
miRNA:   3'- gagUUGuCGGGCUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 34171 0.7 0.999804
Target:  5'- gUCAGCGGUggUCGAGgcGACCGUCGu -3'
miRNA:   3'- gAGUUGUCG--GGCUU--UUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 34384 0.68 0.999992
Target:  5'- gUCAACGGagaagugagggucCCCGggGACgAUCGc -3'
miRNA:   3'- gAGUUGUC-------------GGGCuuUUGgUAGU- -5'
13457 3' -42.5 NC_003409.1 + 49432 0.66 0.999999
Target:  5'- aUCuACAGCCCccccauAGCCAUCc -3'
miRNA:   3'- gAGuUGUCGGGcuu---UUGGUAGu -5'
13457 3' -42.5 NC_003409.1 + 51924 0.67 0.999998
Target:  5'- gCUCGA-GGCuCCGGGAACCGUg- -3'
miRNA:   3'- -GAGUUgUCG-GGCUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 52552 0.66 1
Target:  5'- --aAACAGCCCGAugugcaaaAGACaGUCAg -3'
miRNA:   3'- gagUUGUCGGGCU--------UUUGgUAGU- -5'
13457 3' -42.5 NC_003409.1 + 58661 0.67 0.999998
Target:  5'- cCUC-ACAGCCCGuagacguggacggGGAACCGcUCGa -3'
miRNA:   3'- -GAGuUGUCGGGC-------------UUUUGGU-AGU- -5'
13457 3' -42.5 NC_003409.1 + 62960 0.7 0.999851
Target:  5'- aUCGAU-GCUCGAGAACUGUCGa -3'
miRNA:   3'- gAGUUGuCGGGCUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 63821 0.68 0.999968
Target:  5'- -cCAACAGCCCGguGACgCAa-- -3'
miRNA:   3'- gaGUUGUCGGGCuuUUG-GUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.