miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 3' -42.5 NC_003409.1 + 134497 0.66 0.999999
Target:  5'- uCUCGGCAGCCUGAcuACa---- -3'
miRNA:   3'- -GAGUUGUCGGGCUuuUGguagu -5'
13457 3' -42.5 NC_003409.1 + 132561 0.69 0.999917
Target:  5'- --aGAguGCCCGAcacgguggAGGCCAUCAc -3'
miRNA:   3'- gagUUguCGGGCU--------UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 131466 0.67 0.999995
Target:  5'- cCUgGGCAGCCUaAGGGCCAUg- -3'
miRNA:   3'- -GAgUUGUCGGGcUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 129058 0.75 0.988978
Target:  5'- aCUCAAggaGGCCUGAAgGGCCAUCGg -3'
miRNA:   3'- -GAGUUg--UCGGGCUU-UUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 128886 0.68 0.999968
Target:  5'- uUUuACAGCCCGAugGCCcuUCAg -3'
miRNA:   3'- gAGuUGUCGGGCUuuUGGu-AGU- -5'
13457 3' -42.5 NC_003409.1 + 128806 0.67 0.999995
Target:  5'- aUgGACAcCCCGuGAACCGUCGu -3'
miRNA:   3'- gAgUUGUcGGGCuUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 121186 0.66 1
Target:  5'- --aAAgGGUCCGAAAACCA-CAa -3'
miRNA:   3'- gagUUgUCGGGCUUUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 120644 1.07 0.055217
Target:  5'- gCUCAACAGCCCGAAAACCAUCAg -3'
miRNA:   3'- -GAGUUGUCGGGCUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 120379 0.67 0.999995
Target:  5'- gCUC-ACGGCCCGuguGCCAg-- -3'
miRNA:   3'- -GAGuUGUCGGGCuuuUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 112140 0.69 0.999917
Target:  5'- -cCGGCAccacGCCCGggGGCCAggacUCAc -3'
miRNA:   3'- gaGUUGU----CGGGCuuUUGGU----AGU- -5'
13457 3' -42.5 NC_003409.1 + 111733 0.67 0.999998
Target:  5'- gUUAGCAGUCCGggGuCCAc-- -3'
miRNA:   3'- gAGUUGUCGGGCuuUuGGUagu -5'
13457 3' -42.5 NC_003409.1 + 110684 0.67 0.999995
Target:  5'- -aCAGCAGCC-GAAGAUUGUCGc -3'
miRNA:   3'- gaGUUGUCGGgCUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 109943 0.69 0.999955
Target:  5'- -gCAGCAGUCCaGAAGCCGUg- -3'
miRNA:   3'- gaGUUGUCGGGcUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 108639 0.66 1
Target:  5'- -cCGGCcaGGCCCaGGAGACCAuaUCAc -3'
miRNA:   3'- gaGUUG--UCGGG-CUUUUGGU--AGU- -5'
13457 3' -42.5 NC_003409.1 + 108313 0.68 0.999984
Target:  5'- uCUCGAgggacuguccUGGCUCGAgcAGACCAUCAa -3'
miRNA:   3'- -GAGUU----------GUCGGGCU--UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 107084 0.7 0.999744
Target:  5'- aUCAACucuGGCCaCGAccGCCAUCGa -3'
miRNA:   3'- gAGUUG---UCGG-GCUuuUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 95609 0.66 1
Target:  5'- -cCAGCGGCCCaaaGGGACCAa-- -3'
miRNA:   3'- gaGUUGUCGGGc--UUUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 94732 0.79 0.920926
Target:  5'- gUCAGCAGgCCGAucgAGGCCGUCGa -3'
miRNA:   3'- gAGUUGUCgGGCU---UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 94339 0.72 0.997542
Target:  5'- uUCcGCAGCCCGAcAACCGg-- -3'
miRNA:   3'- gAGuUGUCGGGCUuUUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 91019 0.71 0.999454
Target:  5'- gUguACGGCUCGAGAAgCAUCGg -3'
miRNA:   3'- gAguUGUCGGGCUUUUgGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.