Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 68646 | 0.66 | 0.999999 |
Target: 5'- ---uACAGCCCuGGAAccgagGCCAUCGc -3' miRNA: 3'- gaguUGUCGGG-CUUU-----UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 108313 | 0.68 | 0.999984 |
Target: 5'- uCUCGAgggacuguccUGGCUCGAgcAGACCAUCAa -3' miRNA: 3'- -GAGUU----------GUCGGGCU--UUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 34384 | 0.68 | 0.999992 |
Target: 5'- gUCAACGGagaagugagggucCCCGggGACgAUCGc -3' miRNA: 3'- gAGUUGUC-------------GGGCuuUUGgUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 110684 | 0.67 | 0.999995 |
Target: 5'- -aCAGCAGCC-GAAGAUUGUCGc -3' miRNA: 3'- gaGUUGUCGGgCUUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 80084 | 0.67 | 0.999995 |
Target: 5'- --aGACAGUCUGGAGacggagGCCAUCGa -3' miRNA: 3'- gagUUGUCGGGCUUU------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 128806 | 0.67 | 0.999995 |
Target: 5'- aUgGACAcCCCGuGAACCGUCGu -3' miRNA: 3'- gAgUUGUcGGGCuUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 78292 | 0.67 | 0.999998 |
Target: 5'- ---cGCAGCCCGguAGCCG-CAu -3' miRNA: 3'- gaguUGUCGGGCuuUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 58661 | 0.67 | 0.999998 |
Target: 5'- cCUC-ACAGCCCGuagacguggacggGGAACCGcUCGa -3' miRNA: 3'- -GAGuUGUCGGGC-------------UUUUGGU-AGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 51924 | 0.67 | 0.999998 |
Target: 5'- gCUCGA-GGCuCCGGGAACCGUg- -3' miRNA: 3'- -GAGUUgUCG-GGCUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 89465 | 0.68 | 0.999984 |
Target: 5'- aCUUAaccACAGCCCGucAAACCA-CAg -3' miRNA: 3'- -GAGU---UGUCGGGCu-UUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 128886 | 0.68 | 0.999968 |
Target: 5'- uUUuACAGCCCGAugGCCcuUCAg -3' miRNA: 3'- gAGuUGUCGGGCUuuUGGu-AGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 74393 | 0.68 | 0.999964 |
Target: 5'- uUCcuuCGGCCCGGAGucuccggcggauauACCGUCAc -3' miRNA: 3'- gAGuu-GUCGGGCUUU--------------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 94732 | 0.79 | 0.920926 |
Target: 5'- gUCAGCAGgCCGAucgAGGCCGUCGa -3' miRNA: 3'- gAGUUGUCgGGCU---UUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 18340 | 0.76 | 0.972813 |
Target: 5'- gUCGACAGCCCgcgggaaucGAAAGCCAUg- -3' miRNA: 3'- gAGUUGUCGGG---------CUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 84282 | 0.75 | 0.981077 |
Target: 5'- uUCGACAGCCCGAcuGGCUugucGUCAg -3' miRNA: 3'- gAGUUGUCGGGCUu-UUGG----UAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 27651 | 0.71 | 0.999131 |
Target: 5'- -cCAAC-GCCCGGAAACCG-CAu -3' miRNA: 3'- gaGUUGuCGGGCUUUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 107084 | 0.7 | 0.999744 |
Target: 5'- aUCAACucuGGCCaCGAccGCCAUCGa -3' miRNA: 3'- gAGUUG---UCGG-GCUuuUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 32052 | 0.7 | 0.999804 |
Target: 5'- --aGACAGcCCCGGGAGCCAc-- -3' miRNA: 3'- gagUUGUC-GGGCUUUUGGUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 34171 | 0.7 | 0.999804 |
Target: 5'- gUCAGCGGUggUCGAGgcGACCGUCGu -3' miRNA: 3'- gAGUUGUCG--GGCUU--UUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 76020 | 0.69 | 0.999939 |
Target: 5'- --uGACGGCCCuaGAGGCCGUCu -3' miRNA: 3'- gagUUGUCGGGc-UUUUGGUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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