miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 3' -42.5 NC_003409.1 + 27216 0.67 0.999997
Target:  5'- -cCAACuGCUCGAGGcgacaacGCCAUCGu -3'
miRNA:   3'- gaGUUGuCGGGCUUU-------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 76177 0.67 0.999996
Target:  5'- --aGACGGCCUcuAGGGCCGUCAu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 120379 0.67 0.999995
Target:  5'- gCUC-ACGGCCCGuguGCCAg-- -3'
miRNA:   3'- -GAGuUGUCGGGCuuuUGGUagu -5'
13457 3' -42.5 NC_003409.1 + 131466 0.67 0.999995
Target:  5'- cCUgGGCAGCCUaAGGGCCAUg- -3'
miRNA:   3'- -GAgUUGUCGGGcUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 80084 0.67 0.999995
Target:  5'- --aGACAGUCUGGAGacggagGCCAUCGa -3'
miRNA:   3'- gagUUGUCGGGCUUU------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 128806 0.67 0.999995
Target:  5'- aUgGACAcCCCGuGAACCGUCGu -3'
miRNA:   3'- gAgUUGUcGGGCuUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 110684 0.67 0.999995
Target:  5'- -aCAGCAGCC-GAAGAUUGUCGc -3'
miRNA:   3'- gaGUUGUCGGgCUUUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 34384 0.68 0.999992
Target:  5'- gUCAACGGagaagugagggucCCCGggGACgAUCGc -3'
miRNA:   3'- gAGUUGUC-------------GGGCuuUUGgUAGU- -5'
13457 3' -42.5 NC_003409.1 + 90490 0.68 0.999989
Target:  5'- aUC-ACAGCCCGGAGGCgA-CAc -3'
miRNA:   3'- gAGuUGUCGGGCUUUUGgUaGU- -5'
13457 3' -42.5 NC_003409.1 + 89465 0.68 0.999984
Target:  5'- aCUUAaccACAGCCCGucAAACCA-CAg -3'
miRNA:   3'- -GAGU---UGUCGGGCu-UUUGGUaGU- -5'
13457 3' -42.5 NC_003409.1 + 108313 0.68 0.999984
Target:  5'- uCUCGAgggacuguccUGGCUCGAgcAGACCAUCAa -3'
miRNA:   3'- -GAGUU----------GUCGGGCU--UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 25930 0.68 0.999977
Target:  5'- -aCGGgGGCCCGAAcGACCGUg- -3'
miRNA:   3'- gaGUUgUCGGGCUU-UUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 128886 0.68 0.999968
Target:  5'- uUUuACAGCCCGAugGCCcuUCAg -3'
miRNA:   3'- gAGuUGUCGGGCUuuUGGu-AGU- -5'
13457 3' -42.5 NC_003409.1 + 63821 0.68 0.999968
Target:  5'- -cCAACAGCCCGguGACgCAa-- -3'
miRNA:   3'- gaGUUGUCGGGCuuUUG-GUagu -5'
13457 3' -42.5 NC_003409.1 + 74393 0.68 0.999964
Target:  5'- uUCcuuCGGCCCGGAGucuccggcggauauACCGUCAc -3'
miRNA:   3'- gAGuu-GUCGGGCUUU--------------UGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 31086 0.69 0.999955
Target:  5'- -aCAACAgGCaCCGGAGACCAcgCAu -3'
miRNA:   3'- gaGUUGU-CG-GGCUUUUGGUa-GU- -5'
13457 3' -42.5 NC_003409.1 + 109943 0.69 0.999955
Target:  5'- -gCAGCAGUCCaGAAGCCGUg- -3'
miRNA:   3'- gaGUUGUCGGGcUUUUGGUAgu -5'
13457 3' -42.5 NC_003409.1 + 76020 0.69 0.999939
Target:  5'- --uGACGGCCCuaGAGGCCGUCu -3'
miRNA:   3'- gagUUGUCGGGc-UUUUGGUAGu -5'
13457 3' -42.5 NC_003409.1 + 132561 0.69 0.999917
Target:  5'- --aGAguGCCCGAcacgguggAGGCCAUCAc -3'
miRNA:   3'- gagUUguCGGGCU--------UUUGGUAGU- -5'
13457 3' -42.5 NC_003409.1 + 112140 0.69 0.999917
Target:  5'- -cCGGCAccacGCCCGggGGCCAggacUCAc -3'
miRNA:   3'- gaGUUGU----CGGGCuuUUGGU----AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.