miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13460 5' -46.6 NC_003409.1 + 80805 0.66 0.999544
Target:  5'- uCGCUcuagGCCGUCUUCcuGAAgcauUGUGAa -3'
miRNA:   3'- -GCGA----CGGCAGGAGu-CUU----ACACU- -5'
13460 5' -46.6 NC_003409.1 + 105472 0.66 0.999544
Target:  5'- cCGCUGCU-UUCUCGGggUGg-- -3'
miRNA:   3'- -GCGACGGcAGGAGUCuuACacu -5'
13460 5' -46.6 NC_003409.1 + 121584 0.66 0.999424
Target:  5'- aCGUcGCgGUCa-CAGAAUGUGAc -3'
miRNA:   3'- -GCGaCGgCAGgaGUCUUACACU- -5'
13460 5' -46.6 NC_003409.1 + 75591 0.66 0.999261
Target:  5'- aCGCgGCCGUaucugCCUUgcuuucgcgugggAGAAUGUGAc -3'
miRNA:   3'- -GCGaCGGCA-----GGAG-------------UCUUACACU- -5'
13460 5' -46.6 NC_003409.1 + 109884 0.66 0.999099
Target:  5'- aGCUGCCuuauuaCCUCAGGAUcuaggcaaGUGAc -3'
miRNA:   3'- gCGACGGca----GGAGUCUUA--------CACU- -5'
13460 5' -46.6 NC_003409.1 + 43746 0.66 0.999099
Target:  5'- aCGCucUGCCGUCUgUGGAagGUGAc -3'
miRNA:   3'- -GCG--ACGGCAGGaGUCUuaCACU- -5'
13460 5' -46.6 NC_003409.1 + 53225 0.66 0.998886
Target:  5'- gGCUGCUGUUCUUGGGc-GUGGa -3'
miRNA:   3'- gCGACGGCAGGAGUCUuaCACU- -5'
13460 5' -46.6 NC_003409.1 + 127708 0.67 0.99863
Target:  5'- aGCUGCUGcUCUUgGGGAcGUGAc -3'
miRNA:   3'- gCGACGGC-AGGAgUCUUaCACU- -5'
13460 5' -46.6 NC_003409.1 + 15546 0.68 0.994985
Target:  5'- aUGCUGCuCGaacagcaauugaaUCCUCAGggUGgUGGu -3'
miRNA:   3'- -GCGACG-GC-------------AGGAGUCuuAC-ACU- -5'
13460 5' -46.6 NC_003409.1 + 102147 0.7 0.98615
Target:  5'- aGCUGCgGUCuCUCGGcuuccgcGUGUGAu -3'
miRNA:   3'- gCGACGgCAG-GAGUCu------UACACU- -5'
13460 5' -46.6 NC_003409.1 + 34186 0.73 0.926585
Target:  5'- gGC-GaCCGUCgUCAGggUGUGAg -3'
miRNA:   3'- gCGaC-GGCAGgAGUCuuACACU- -5'
13460 5' -46.6 NC_003409.1 + 121465 1.06 0.022956
Target:  5'- uCGCUGCCGUCCUCAGAAUGUGAu -3'
miRNA:   3'- -GCGACGGCAGGAGUCUUACACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.