miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13465 3' -51.6 NC_003409.1 + 132886 1.09 0.006315
Target:  5'- cCACCGCAAACACCAGGGAGCAAUACAc -3'
miRNA:   3'- -GUGGCGUUUGUGGUCCCUCGUUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 56116 0.78 0.451178
Target:  5'- cCACCGCGuaucuuaaAGCGCCccgugaauGGGGGCAGUGCAc -3'
miRNA:   3'- -GUGGCGU--------UUGUGGu-------CCCUCGUUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 131391 0.77 0.520928
Target:  5'- gGCCGCGuugguGCuGCCuGGGAGCAGUGCc -3'
miRNA:   3'- gUGGCGUu----UG-UGGuCCCUCGUUAUGu -5'
13465 3' -51.6 NC_003409.1 + 15953 0.76 0.583834
Target:  5'- aCACUGCAAACGCaC-GGGAGCAcUGCu -3'
miRNA:   3'- -GUGGCGUUUGUG-GuCCCUCGUuAUGu -5'
13465 3' -51.6 NC_003409.1 + 18265 0.75 0.648084
Target:  5'- uCGCCaaaaaGUGAGCACCAGGGGGCGggguuucuaacGUGCGa -3'
miRNA:   3'- -GUGG-----CGUUUGUGGUCCCUCGU-----------UAUGU- -5'
13465 3' -51.6 NC_003409.1 + 116042 0.72 0.772843
Target:  5'- -uCCGCcuGC-CCAGGGAGCAggaGUAUAa -3'
miRNA:   3'- guGGCGuuUGuGGUCCCUCGU---UAUGU- -5'
13465 3' -51.6 NC_003409.1 + 68713 0.72 0.801639
Target:  5'- gGCCGUAAGCACCAGGu-GUuucuGUGCGu -3'
miRNA:   3'- gUGGCGUUUGUGGUCCcuCGu---UAUGU- -5'
13465 3' -51.6 NC_003409.1 + 75115 0.71 0.82001
Target:  5'- gACCGguAugGCCGGGGgcuGGCAAccUACGu -3'
miRNA:   3'- gUGGCguUugUGGUCCC---UCGUU--AUGU- -5'
13465 3' -51.6 NC_003409.1 + 53287 0.71 0.828919
Target:  5'- uCGCCGCGGcGCACCAccuGGGAGguAUGa- -3'
miRNA:   3'- -GUGGCGUU-UGUGGU---CCCUCguUAUgu -5'
13465 3' -51.6 NC_003409.1 + 4368 0.7 0.862501
Target:  5'- gGCCGCAAACAgCuGGGcGCcaauAUGCAa -3'
miRNA:   3'- gUGGCGUUUGUgGuCCCuCGu---UAUGU- -5'
13465 3' -51.6 NC_003409.1 + 52261 0.7 0.862501
Target:  5'- cCACCGCGuucguaAACACacacauagUAGGGAGCAcccgaGUACAc -3'
miRNA:   3'- -GUGGCGU------UUGUG--------GUCCCUCGU-----UAUGU- -5'
13465 3' -51.6 NC_003409.1 + 84807 0.7 0.870345
Target:  5'- aCGCCucguuuaaAGGCACCAGGGGGCGcagGCGa -3'
miRNA:   3'- -GUGGcg------UUUGUGGUCCCUCGUua-UGU- -5'
13465 3' -51.6 NC_003409.1 + 81504 0.7 0.892441
Target:  5'- gCGCCGCAcguacuGCGCCuugccguuGGGGGCGGggugACAg -3'
miRNA:   3'- -GUGGCGUu-----UGUGGu-------CCCUCGUUa---UGU- -5'
13465 3' -51.6 NC_003409.1 + 128048 0.7 0.892441
Target:  5'- aACCGgGAGCACaguGGGGGGUAAauucUGCAa -3'
miRNA:   3'- gUGGCgUUUGUGg--UCCCUCGUU----AUGU- -5'
13465 3' -51.6 NC_003409.1 + 107269 0.69 0.924215
Target:  5'- cCACCGCGAAgGCUAGaGAGUu-UGCAg -3'
miRNA:   3'- -GUGGCGUUUgUGGUCcCUCGuuAUGU- -5'
13465 3' -51.6 NC_003409.1 + 84330 0.68 0.929787
Target:  5'- gGCCuGCGAGauaGCCAagcGGGAGCuAUGCGa -3'
miRNA:   3'- gUGG-CGUUUg--UGGU---CCCUCGuUAUGU- -5'
13465 3' -51.6 NC_003409.1 + 87517 0.68 0.933004
Target:  5'- cCACgCGCGAGCACauuggccgcuuugGGGGAGCAAUc-- -3'
miRNA:   3'- -GUG-GCGUUUGUGg------------UCCCUCGUUAugu -5'
13465 3' -51.6 NC_003409.1 + 82762 0.68 0.935096
Target:  5'- uCACCGCucucauAAgAgCAGGGGGCAAagACGa -3'
miRNA:   3'- -GUGGCGu-----UUgUgGUCCCUCGUUa-UGU- -5'
13465 3' -51.6 NC_003409.1 + 72184 0.68 0.940144
Target:  5'- gACCGCGGACugCAcaGAGUggUGCc -3'
miRNA:   3'- gUGGCGUUUGugGUccCUCGuuAUGu -5'
13465 3' -51.6 NC_003409.1 + 31958 0.68 0.940144
Target:  5'- uGCCGCGucGGCGCCccAGGGcgcauAGUGAUACGu -3'
miRNA:   3'- gUGGCGU--UUGUGG--UCCC-----UCGUUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.