Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13465 | 3' | -51.6 | NC_003409.1 | + | 3412 | 0.66 | 0.976939 |
Target: 5'- -cCCGCAGGgACCAguGGGGGCc--GCAg -3' miRNA: 3'- guGGCGUUUgUGGU--CCCUCGuuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 4368 | 0.7 | 0.862501 |
Target: 5'- gGCCGCAAACAgCuGGGcGCcaauAUGCAa -3' miRNA: 3'- gUGGCGUUUGUgGuCCCuCGu---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 15953 | 0.76 | 0.583834 |
Target: 5'- aCACUGCAAACGCaC-GGGAGCAcUGCu -3' miRNA: 3'- -GUGGCGUUUGUG-GuCCCUCGUuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 16001 | 0.66 | 0.981612 |
Target: 5'- gCACCGCAAGCAgCAaacGGAGaccUACAc -3' miRNA: 3'- -GUGGCGUUUGUgGUc--CCUCguuAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 18265 | 0.75 | 0.648084 |
Target: 5'- uCGCCaaaaaGUGAGCACCAGGGGGCGggguuucuaacGUGCGa -3' miRNA: 3'- -GUGG-----CGUUUGUGGUCCCUCGU-----------UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 31958 | 0.68 | 0.940144 |
Target: 5'- uGCCGCGucGGCGCCccAGGGcgcauAGUGAUACGu -3' miRNA: 3'- gUGGCGU--UUGUGG--UCCC-----UCGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 33017 | 0.68 | 0.949459 |
Target: 5'- cCGCCGCAAggaGCAgCCugcaGGGGAGCAc---- -3' miRNA: 3'- -GUGGCGUU---UGU-GG----UCCCUCGUuaugu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 41433 | 0.66 | 0.976939 |
Target: 5'- gCACCGCAauaaacaucAACAUCAGuGGGGaCAugcUGCAc -3' miRNA: 3'- -GUGGCGU---------UUGUGGUC-CCUC-GUu--AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 45982 | 0.66 | 0.974299 |
Target: 5'- uCAUgGCAAA-ACCAGGGuGCA-UGCGg -3' miRNA: 3'- -GUGgCGUUUgUGGUCCCuCGUuAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 52261 | 0.7 | 0.862501 |
Target: 5'- cCACCGCGuucguaAACACacacauagUAGGGAGCAcccgaGUACAc -3' miRNA: 3'- -GUGGCGU------UUGUG--------GUCCCUCGU-----UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 53287 | 0.71 | 0.828919 |
Target: 5'- uCGCCGCGGcGCACCAccuGGGAGguAUGa- -3' miRNA: 3'- -GUGGCGUU-UGUGGU---CCCUCguUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 56116 | 0.78 | 0.451178 |
Target: 5'- cCACCGCGuaucuuaaAGCGCCccgugaauGGGGGCAGUGCAc -3' miRNA: 3'- -GUGGCGU--------UUGUGGu-------CCCUCGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 67799 | 0.66 | 0.979374 |
Target: 5'- gAUCGCGgugggugcGGCGCgCAGGGGGCGccACGa -3' miRNA: 3'- gUGGCGU--------UUGUG-GUCCCUCGUuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 68713 | 0.72 | 0.801639 |
Target: 5'- gGCCGUAAGCACCAGGu-GUuucuGUGCGu -3' miRNA: 3'- gUGGCGUUUGUGGUCCcuCGu---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 72184 | 0.68 | 0.940144 |
Target: 5'- gACCGCGGACugCAcaGAGUggUGCc -3' miRNA: 3'- gUGGCGUUUGugGUccCUCGuuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 75115 | 0.71 | 0.82001 |
Target: 5'- gACCGguAugGCCGGGGgcuGGCAAccUACGu -3' miRNA: 3'- gUGGCguUugUGGUCCC---UCGUU--AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 78726 | 0.67 | 0.971446 |
Target: 5'- gGuuGaCGAAgGCCGGGGAGgGAUugAc -3' miRNA: 3'- gUggC-GUUUgUGGUCCCUCgUUAugU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 81504 | 0.7 | 0.892441 |
Target: 5'- gCGCCGCAcguacuGCGCCuugccguuGGGGGCGGggugACAg -3' miRNA: 3'- -GUGGCGUu-----UGUGGu-------CCCUCGUUa---UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 81554 | 0.66 | 0.983664 |
Target: 5'- cCGgCGCuguGGC-CCGGGGAGUGAUggaGCAg -3' miRNA: 3'- -GUgGCGu--UUGuGGUCCCUCGUUA---UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 82762 | 0.68 | 0.935096 |
Target: 5'- uCACCGCucucauAAgAgCAGGGGGCAAagACGa -3' miRNA: 3'- -GUGGCGu-----UUgUgGUCCCUCGUUa-UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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