Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13465 | 3' | -51.6 | NC_003409.1 | + | 72184 | 0.68 | 0.940144 |
Target: 5'- gACCGCGGACugCAcaGAGUggUGCc -3' miRNA: 3'- gUGGCGUUUGugGUccCUCGuuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 94749 | 0.68 | 0.940144 |
Target: 5'- gGCCGUcGAUAUCAGGGuggccAGCAGUAa- -3' miRNA: 3'- gUGGCGuUUGUGGUCCC-----UCGUUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 31958 | 0.68 | 0.940144 |
Target: 5'- uGCCGCGucGGCGCCccAGGGcgcauAGUGAUACGu -3' miRNA: 3'- gUGGCGU--UUGUGG--UCCC-----UCGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 82762 | 0.68 | 0.935096 |
Target: 5'- uCACCGCucucauAAgAgCAGGGGGCAAagACGa -3' miRNA: 3'- -GUGGCGu-----UUgUgGUCCCUCGUUa-UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 87517 | 0.68 | 0.933004 |
Target: 5'- cCACgCGCGAGCACauuggccgcuuugGGGGAGCAAUc-- -3' miRNA: 3'- -GUG-GCGUUUGUGg------------UCCCUCGUUAugu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 84330 | 0.68 | 0.929787 |
Target: 5'- gGCCuGCGAGauaGCCAagcGGGAGCuAUGCGa -3' miRNA: 3'- gUGG-CGUUUg--UGGU---CCCUCGuUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 107269 | 0.69 | 0.924215 |
Target: 5'- cCACCGCGAAgGCUAGaGAGUu-UGCAg -3' miRNA: 3'- -GUGGCGUUUgUGGUCcCUCGuuAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 81504 | 0.7 | 0.892441 |
Target: 5'- gCGCCGCAcguacuGCGCCuugccguuGGGGGCGGggugACAg -3' miRNA: 3'- -GUGGCGUu-----UGUGGu-------CCCUCGUUa---UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 128048 | 0.7 | 0.892441 |
Target: 5'- aACCGgGAGCACaguGGGGGGUAAauucUGCAa -3' miRNA: 3'- gUGGCgUUUGUGg--UCCCUCGUU----AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 84807 | 0.7 | 0.870345 |
Target: 5'- aCGCCucguuuaaAGGCACCAGGGGGCGcagGCGa -3' miRNA: 3'- -GUGGcg------UUUGUGGUCCCUCGUua-UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 4368 | 0.7 | 0.862501 |
Target: 5'- gGCCGCAAACAgCuGGGcGCcaauAUGCAa -3' miRNA: 3'- gUGGCGUUUGUgGuCCCuCGu---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 52261 | 0.7 | 0.862501 |
Target: 5'- cCACCGCGuucguaAACACacacauagUAGGGAGCAcccgaGUACAc -3' miRNA: 3'- -GUGGCGU------UUGUG--------GUCCCUCGU-----UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 53287 | 0.71 | 0.828919 |
Target: 5'- uCGCCGCGGcGCACCAccuGGGAGguAUGa- -3' miRNA: 3'- -GUGGCGUU-UGUGGU---CCCUCguUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 75115 | 0.71 | 0.82001 |
Target: 5'- gACCGguAugGCCGGGGgcuGGCAAccUACGu -3' miRNA: 3'- gUGGCguUugUGGUCCC---UCGUU--AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 68713 | 0.72 | 0.801639 |
Target: 5'- gGCCGUAAGCACCAGGu-GUuucuGUGCGu -3' miRNA: 3'- gUGGCGUUUGUGGUCCcuCGu---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 116042 | 0.72 | 0.772843 |
Target: 5'- -uCCGCcuGC-CCAGGGAGCAggaGUAUAa -3' miRNA: 3'- guGGCGuuUGuGGUCCCUCGU---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 18265 | 0.75 | 0.648084 |
Target: 5'- uCGCCaaaaaGUGAGCACCAGGGGGCGggguuucuaacGUGCGa -3' miRNA: 3'- -GUGG-----CGUUUGUGGUCCCUCGU-----------UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 15953 | 0.76 | 0.583834 |
Target: 5'- aCACUGCAAACGCaC-GGGAGCAcUGCu -3' miRNA: 3'- -GUGGCGUUUGUG-GuCCCUCGUuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 131391 | 0.77 | 0.520928 |
Target: 5'- gGCCGCGuugguGCuGCCuGGGAGCAGUGCc -3' miRNA: 3'- gUGGCGUu----UG-UGGuCCCUCGUUAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 56116 | 0.78 | 0.451178 |
Target: 5'- cCACCGCGuaucuuaaAGCGCCccgugaauGGGGGCAGUGCAc -3' miRNA: 3'- -GUGGCGU--------UUGUGGu-------CCCUCGUUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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