miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13468 5' -59.3 NC_003409.1 + 73970 0.66 0.74165
Target:  5'- -gGGGUgGUGUCgaAGAGGGgGCACa- -3'
miRNA:   3'- caUCCGgUACGGa-UCUCCCgCGUGgc -5'
13468 5' -59.3 NC_003409.1 + 24239 0.66 0.731919
Target:  5'- uGUAGGCguuagccaccCAUGuUCU--GGGGCGCGCCa -3'
miRNA:   3'- -CAUCCG----------GUAC-GGAucUCCCGCGUGGc -5'
13468 5' -59.3 NC_003409.1 + 87604 0.66 0.731919
Target:  5'- -aAGGCCggGCUccucAGGGUGCugCGa -3'
miRNA:   3'- caUCCGGuaCGGauc-UCCCGCGugGC- -5'
13468 5' -59.3 NC_003409.1 + 31674 0.66 0.712209
Target:  5'- -aGGGCCAgGCCUAauGGGGUGUggggGCCa -3'
miRNA:   3'- caUCCGGUaCGGAUc-UCCCGCG----UGGc -5'
13468 5' -59.3 NC_003409.1 + 37957 0.66 0.702248
Target:  5'- -gAGGCCAggcgcGCCUgcgcagcucaAGAGGcG-GCGCCGg -3'
miRNA:   3'- caUCCGGUa----CGGA----------UCUCC-CgCGUGGC- -5'
13468 5' -59.3 NC_003409.1 + 115696 0.66 0.692228
Target:  5'- aGUAGGCUggGCUUuguGGGGCgacuuGCGCCGc -3'
miRNA:   3'- -CAUCCGGuaCGGAuc-UCCCG-----CGUGGC- -5'
13468 5' -59.3 NC_003409.1 + 36628 0.67 0.661907
Target:  5'- aGgcGGCCGUGCUUcaggugcaugAGAGGGaaCACCa -3'
miRNA:   3'- -CauCCGGUACGGA----------UCUCCCgcGUGGc -5'
13468 5' -59.3 NC_003409.1 + 24766 0.67 0.651741
Target:  5'- gGUGGcgcGCCGggaucccCCUccggggAGGGGGCGCGCCGg -3'
miRNA:   3'- -CAUC---CGGUac-----GGA------UCUCCCGCGUGGC- -5'
13468 5' -59.3 NC_003409.1 + 20823 0.67 0.641559
Target:  5'- --uGGCCugcAUGCCaaauagagAGAGGGUGCcuauGCCGg -3'
miRNA:   3'- cauCCGG---UACGGa-------UCUCCCGCG----UGGC- -5'
13468 5' -59.3 NC_003409.1 + 133308 0.67 0.631371
Target:  5'- -aGGGCguUGCCaGGAgugguggcgauGGuGCGCACCGu -3'
miRNA:   3'- caUCCGguACGGaUCU-----------CC-CGCGUGGC- -5'
13468 5' -59.3 NC_003409.1 + 12013 0.68 0.621182
Target:  5'- ---aGCCA-GCCUGGAGGGCcUGCUGg -3'
miRNA:   3'- caucCGGUaCGGAUCUCCCGcGUGGC- -5'
13468 5' -59.3 NC_003409.1 + 4362 0.68 0.600838
Target:  5'- aUGGaGCCucUGCCUucaAGGGCGUGCCa -3'
miRNA:   3'- cAUC-CGGu-ACGGAuc-UCCCGCGUGGc -5'
13468 5' -59.3 NC_003409.1 + 111157 0.68 0.580585
Target:  5'- -cGGGUugCGUGUCgGGAGGGCGCcgGCCu -3'
miRNA:   3'- caUCCG--GUACGGaUCUCCCGCG--UGGc -5'
13468 5' -59.3 NC_003409.1 + 100081 0.68 0.569505
Target:  5'- -cGGGCCaAUGCCaUGGcGGGGCggcugugGCACCa -3'
miRNA:   3'- caUCCGG-UACGG-AUC-UCCCG-------CGUGGc -5'
13468 5' -59.3 NC_003409.1 + 109100 0.69 0.511175
Target:  5'- -cGGGCCccGUGCCUGGAcgGGGUcuGC-CCGg -3'
miRNA:   3'- caUCCGG--UACGGAUCU--CCCG--CGuGGC- -5'
13468 5' -59.3 NC_003409.1 + 87166 0.7 0.501522
Target:  5'- gGUGGGUgGUgcGCCggcGGAGGGCGUGgCCGa -3'
miRNA:   3'- -CAUCCGgUA--CGGa--UCUCCCGCGU-GGC- -5'
13468 5' -59.3 NC_003409.1 + 40592 0.7 0.491951
Target:  5'- -aAGGCUA-GUCUaguAGAGGGCGCGgCGc -3'
miRNA:   3'- caUCCGGUaCGGA---UCUCCCGCGUgGC- -5'
13468 5' -59.3 NC_003409.1 + 103021 0.7 0.473068
Target:  5'- aGUAGGCUcUGgCUAGcGGGCGC-CUGg -3'
miRNA:   3'- -CAUCCGGuACgGAUCuCCCGCGuGGC- -5'
13468 5' -59.3 NC_003409.1 + 4576 0.7 0.463764
Target:  5'- cGUAGGCCAgGUgCUGGAGGGUGUaagaugACCc -3'
miRNA:   3'- -CAUCCGGUaCG-GAUCUCCCGCG------UGGc -5'
13468 5' -59.3 NC_003409.1 + 3877 0.71 0.445449
Target:  5'- -cGGGCguUGUCUgAGAGGGCacggGCACCa -3'
miRNA:   3'- caUCCGguACGGA-UCUCCCG----CGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.