miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1347 5' -57.9 NC_001335.1 + 25891 0.72 0.231268
Target:  5'- uGGU-GCCCuUGGUGGUCGACGGCCu- -3'
miRNA:   3'- uUCAgUGGG-ACCAUCGGCUGCUGGca -5'
1347 5' -57.9 NC_001335.1 + 22333 0.66 0.546088
Target:  5'- --aUCACCCcggagGGggAGCUGAuCGACCGg -3'
miRNA:   3'- uucAGUGGGa----CCa-UCGGCU-GCUGGCa -5'
1347 5' -57.9 NC_001335.1 + 37947 0.66 0.556776
Target:  5'- gGAGuUCGCCCggucGGUGGCgaaGACGcuGCCGa -3'
miRNA:   3'- -UUC-AGUGGGa---CCAUCGg--CUGC--UGGCa -5'
1347 5' -57.9 NC_001335.1 + 43701 0.66 0.550355
Target:  5'- -cGUCGCUgaGGUcuacgagaaggcucuGGCCGAgGGCCGc -3'
miRNA:   3'- uuCAGUGGgaCCA---------------UCGGCUgCUGGCa -5'
1347 5' -57.9 NC_001335.1 + 5619 0.67 0.50407
Target:  5'- -uGUCACCgaGGUcAGCCGcCGACUc- -3'
miRNA:   3'- uuCAGUGGgaCCA-UCGGCuGCUGGca -5'
1347 5' -57.9 NC_001335.1 + 22857 0.67 0.463513
Target:  5'- -cGUCAUcuUCUGGUAGUCGGUGGCUGUc -3'
miRNA:   3'- uuCAGUG--GGACCAUCGGCUGCUGGCA- -5'
1347 5' -57.9 NC_001335.1 + 16000 0.67 0.46252
Target:  5'- gAAGUCgGCCUUGGccugGGCCgcaucgaGAUGACCGUu -3'
miRNA:   3'- -UUCAG-UGGGACCa---UCGG-------CUGCUGGCA- -5'
1347 5' -57.9 NC_001335.1 + 20995 0.69 0.370362
Target:  5'- uGGU-GCUCgaccgGGUAGCCGAgGACCGa -3'
miRNA:   3'- uUCAgUGGGa----CCAUCGGCUgCUGGCa -5'
1347 5' -57.9 NC_001335.1 + 38246 0.69 0.344196
Target:  5'- uGGUCGCCCUggcgucacuggacGGUAGCUG-CGAuCCGg -3'
miRNA:   3'- uUCAGUGGGA-------------CCAUCGGCuGCU-GGCa -5'
1347 5' -57.9 NC_001335.1 + 28013 0.74 0.182321
Target:  5'- gGAGUUGCCCUGGUAcaucGCUGAgGACgGUa -3'
miRNA:   3'- -UUCAGUGGGACCAU----CGGCUgCUGgCA- -5'
1347 5' -57.9 NC_001335.1 + 12161 1.05 0.000874
Target:  5'- gAAGUCACCCUGGUAGCCGACGACCGUg -3'
miRNA:   3'- -UUCAGUGGGACCAUCGGCUGCUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.