miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1349 5' -59.2 NC_001335.1 + 12684 1.09 0.000347
Target:  5'- gAGCCGGCGCUCGAUCAGCGCCAUCACu -3'
miRNA:   3'- -UCGGCCGCGAGCUAGUCGCGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 40587 0.69 0.325454
Target:  5'- gGGCCGGUGCUCaAUCAaCGCgGaCACc -3'
miRNA:   3'- -UCGGCCGCGAGcUAGUcGCGgUaGUG- -5'
1349 5' -59.2 NC_001335.1 + 8581 0.69 0.295184
Target:  5'- uGGCCGGCGCUC----AGCGUCGUaguaGCu -3'
miRNA:   3'- -UCGGCCGCGAGcuagUCGCGGUAg---UG- -5'
1349 5' -59.2 NC_001335.1 + 39798 0.7 0.267151
Target:  5'- cGgCGGCGCUCG--CGGCGCugacgaCAUCGCa -3'
miRNA:   3'- uCgGCCGCGAGCuaGUCGCG------GUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 11902 0.71 0.217586
Target:  5'- aGGUCGGCGUUgGAgcCGGUGCCGUC-Cg -3'
miRNA:   3'- -UCGGCCGCGAgCUa-GUCGCGGUAGuG- -5'
1349 5' -59.2 NC_001335.1 + 7567 0.71 0.211975
Target:  5'- cGGCCGGCGCUUc--CAGCGCgucguaCAUCAUc -3'
miRNA:   3'- -UCGGCCGCGAGcuaGUCGCG------GUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 14401 0.72 0.190764
Target:  5'- aGGCCGGCGUagGAgcagCGGUGCCugcgCACc -3'
miRNA:   3'- -UCGGCCGCGagCUa---GUCGCGGua--GUG- -5'
1349 5' -59.2 NC_001335.1 + 12715 0.72 0.185761
Target:  5'- -uCCGGCGCUUGAUCAuGCGCUcgAUCuGCu -3'
miRNA:   3'- ucGGCCGCGAGCUAGU-CGCGG--UAG-UG- -5'
1349 5' -59.2 NC_001335.1 + 16657 0.73 0.1761
Target:  5'- cGCCGGCGUUgGA-CAGCGUCAggaACg -3'
miRNA:   3'- uCGGCCGCGAgCUaGUCGCGGUag-UG- -5'
1349 5' -59.2 NC_001335.1 + 16996 0.68 0.333373
Target:  5'- aGGCCGGCGUg-----AGCGCCGUgACg -3'
miRNA:   3'- -UCGGCCGCGagcuagUCGCGGUAgUG- -5'
1349 5' -59.2 NC_001335.1 + 25201 0.68 0.341433
Target:  5'- aAGaaGGCaGC-CGc-CAGCGCCAUCACg -3'
miRNA:   3'- -UCggCCG-CGaGCuaGUCGCGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 34278 0.68 0.375062
Target:  5'- uGGCCGGCGgUgugcgcCGGUCGGCGCggauGUCGa -3'
miRNA:   3'- -UCGGCCGCgA------GCUAGUCGCGg---UAGUg -5'
1349 5' -59.2 NC_001335.1 + 9880 0.66 0.448706
Target:  5'- uGGCCGGCugugGCuUCGG-CGGUGCCGUgGg -3'
miRNA:   3'- -UCGGCCG----CG-AGCUaGUCGCGGUAgUg -5'
1349 5' -59.2 NC_001335.1 + 41462 0.66 0.458466
Target:  5'- aAGUCGGCGUUCG-UCcuCGCCuacgCGCu -3'
miRNA:   3'- -UCGGCCGCGAGCuAGucGCGGua--GUG- -5'
1349 5' -59.2 NC_001335.1 + 490 0.66 0.439062
Target:  5'- cAGUgGGCaCUCGAgcgAGUGCCAUgCACa -3'
miRNA:   3'- -UCGgCCGcGAGCUag-UCGCGGUA-GUG- -5'
1349 5' -59.2 NC_001335.1 + 1875 0.66 0.435238
Target:  5'- cGGCCGGggaauacgucccaGCUCGAcaUCAGCGa-GUCGCc -3'
miRNA:   3'- -UCGGCCg------------CGAGCU--AGUCGCggUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 11820 0.67 0.429538
Target:  5'- uGUCGGUGCcgUUGAUCgcGGCguugucgaacGCCAUCGCg -3'
miRNA:   3'- uCGGCCGCG--AGCUAG--UCG----------CGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 13789 0.67 0.420137
Target:  5'- aAGCCagacGGCGCguggcCGAacUCaAGCGCCAaCGCg -3'
miRNA:   3'- -UCGG----CCGCGa----GCU--AG-UCGCGGUaGUG- -5'
1349 5' -59.2 NC_001335.1 + 7003 0.67 0.410861
Target:  5'- gAGCCGGCG---GAUCA-CGCCcUCGCg -3'
miRNA:   3'- -UCGGCCGCgagCUAGUcGCGGuAGUG- -5'
1349 5' -59.2 NC_001335.1 + 18735 0.67 0.383812
Target:  5'- cGGUgGGgGaCUCGAaCAGCGCCAgcuUCAg -3'
miRNA:   3'- -UCGgCCgC-GAGCUaGUCGCGGU---AGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.