miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1349 5' -59.2 NC_001335.1 + 25201 0.68 0.341433
Target:  5'- aAGaaGGCaGC-CGc-CAGCGCCAUCACg -3'
miRNA:   3'- -UCggCCG-CGaGCuaGUCGCGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 20743 0.66 0.484354
Target:  5'- uGGCCgacggggcgaugaaGGCGUUCacgcuGUCAGCguucgcaGCCAUCGCa -3'
miRNA:   3'- -UCGG--------------CCGCGAGc----UAGUCG-------CGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 35416 0.66 0.458465
Target:  5'- gAGaUCGGCgGCUCGuagaGGUaGCCAUCGCg -3'
miRNA:   3'- -UC-GGCCG-CGAGCuag-UCG-CGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 37854 0.66 0.458465
Target:  5'- -uCgGGCGUUCGG-CAGCGUCuUCGCc -3'
miRNA:   3'- ucGgCCGCGAGCUaGUCGCGGuAGUG- -5'
1349 5' -59.2 NC_001335.1 + 49218 0.66 0.439062
Target:  5'- cGUCGuacGCGCUCGGguugCcGCGCCAgucgUCGCg -3'
miRNA:   3'- uCGGC---CGCGAGCUa---GuCGCGGU----AGUG- -5'
1349 5' -59.2 NC_001335.1 + 24135 0.67 0.420137
Target:  5'- uGCUGGCGCUCGcggccaGGCGUgGuucuUCGCg -3'
miRNA:   3'- uCGGCCGCGAGCuag---UCGCGgU----AGUG- -5'
1349 5' -59.2 NC_001335.1 + 27288 0.67 0.410861
Target:  5'- cGCCucGGCGaggUUGGccUCGGCGCgGUCACg -3'
miRNA:   3'- uCGG--CCGCg--AGCU--AGUCGCGgUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 16211 0.67 0.401714
Target:  5'- uGGCCGGUcuGCUggcCGGUC--UGCCGUCGCu -3'
miRNA:   3'- -UCGGCCG--CGA---GCUAGucGCGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 16256 0.68 0.375062
Target:  5'- gAGCCGGCGCU-----GGCGUaGUCGCg -3'
miRNA:   3'- -UCGGCCGCGAgcuagUCGCGgUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 8746 0.69 0.310038
Target:  5'- cGGCCGGuCGUUcaucaCGAUCAGCaaGCCAgaccCGCa -3'
miRNA:   3'- -UCGGCC-GCGA-----GCUAGUCG--CGGUa---GUG- -5'
1349 5' -59.2 NC_001335.1 + 13702 0.7 0.273952
Target:  5'- cGuuGGCGCUUGAguUCGgccacGCGCCGUCu- -3'
miRNA:   3'- uCggCCGCGAGCU--AGU-----CGCGGUAGug -5'
1349 5' -59.2 NC_001335.1 + 52069 0.7 0.259829
Target:  5'- aGGCCGGCuCUCGcaucgucgcauGUCAGCGCggguaugggcgugUAUCGCa -3'
miRNA:   3'- -UCGGCCGcGAGC-----------UAGUCGCG-------------GUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 9307 0.72 0.208669
Target:  5'- gAGCUGGCcaacuucaccaacgcGCUCGAUCAGauCGCCAaacaggUCGCu -3'
miRNA:   3'- -UCGGCCG---------------CGAGCUAGUC--GCGGU------AGUG- -5'
1349 5' -59.2 NC_001335.1 + 3706 0.75 0.113719
Target:  5'- --gCGGCGCUCGuucgaugagGUCGGUGUCGUCACg -3'
miRNA:   3'- ucgGCCGCGAGC---------UAGUCGCGGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.