Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 16996 | 0.68 | 0.333373 |
Target: 5'- aGGCCGGCGUg-----AGCGCCGUgACg -3' miRNA: 3'- -UCGGCCGCGagcuagUCGCGGUAgUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 18735 | 0.67 | 0.383812 |
Target: 5'- cGGUgGGgGaCUCGAaCAGCGCCAgcuUCAg -3' miRNA: 3'- -UCGgCCgC-GAGCUaGUCGCGGU---AGUg -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 20743 | 0.66 | 0.484354 |
Target: 5'- uGGCCgacggggcgaugaaGGCGUUCacgcuGUCAGCguucgcaGCCAUCGCa -3' miRNA: 3'- -UCGG--------------CCGCGAGc----UAGUCG-------CGGUAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 24135 | 0.67 | 0.420137 |
Target: 5'- uGCUGGCGCUCGcggccaGGCGUgGuucuUCGCg -3' miRNA: 3'- uCGGCCGCGAGCuag---UCGCGgU----AGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 25201 | 0.68 | 0.341433 |
Target: 5'- aAGaaGGCaGC-CGc-CAGCGCCAUCACg -3' miRNA: 3'- -UCggCCG-CGaGCuaGUCGCGGUAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 27288 | 0.67 | 0.410861 |
Target: 5'- cGCCucGGCGaggUUGGccUCGGCGCgGUCACg -3' miRNA: 3'- uCGG--CCGCg--AGCU--AGUCGCGgUAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 34278 | 0.68 | 0.375062 |
Target: 5'- uGGCCGGCGgUgugcgcCGGUCGGCGCggauGUCGa -3' miRNA: 3'- -UCGGCCGCgA------GCUAGUCGCGg---UAGUg -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 35416 | 0.66 | 0.458465 |
Target: 5'- gAGaUCGGCgGCUCGuagaGGUaGCCAUCGCg -3' miRNA: 3'- -UC-GGCCG-CGAGCuag-UCG-CGGUAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 37854 | 0.66 | 0.458465 |
Target: 5'- -uCgGGCGUUCGG-CAGCGUCuUCGCc -3' miRNA: 3'- ucGgCCGCGAGCUaGUCGCGGuAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 39798 | 0.7 | 0.267151 |
Target: 5'- cGgCGGCGCUCG--CGGCGCugacgaCAUCGCa -3' miRNA: 3'- uCgGCCGCGAGCuaGUCGCG------GUAGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 40587 | 0.69 | 0.325454 |
Target: 5'- gGGCCGGUGCUCaAUCAaCGCgGaCACc -3' miRNA: 3'- -UCGGCCGCGAGcUAGUcGCGgUaGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 41462 | 0.66 | 0.458466 |
Target: 5'- aAGUCGGCGUUCG-UCcuCGCCuacgCGCu -3' miRNA: 3'- -UCGGCCGCGAGCuAGucGCGGua--GUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 49218 | 0.66 | 0.439062 |
Target: 5'- cGUCGuacGCGCUCGGguugCcGCGCCAgucgUCGCg -3' miRNA: 3'- uCGGC---CGCGAGCUa---GuCGCGGU----AGUG- -5' |
|||||||
1349 | 5' | -59.2 | NC_001335.1 | + | 52069 | 0.7 | 0.259829 |
Target: 5'- aGGCCGGCuCUCGcaucgucgcauGUCAGCGCggguaugggcgugUAUCGCa -3' miRNA: 3'- -UCGGCCGcGAGC-----------UAGUCGCG-------------GUAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home