miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1349 5' -59.2 NC_001335.1 + 27288 0.67 0.410861
Target:  5'- cGCCucGGCGaggUUGGccUCGGCGCgGUCACg -3'
miRNA:   3'- uCGG--CCGCg--AGCU--AGUCGCGgUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 7003 0.67 0.410861
Target:  5'- gAGCCGGCG---GAUCA-CGCCcUCGCg -3'
miRNA:   3'- -UCGGCCGCgagCUAGUcGCGGuAGUG- -5'
1349 5' -59.2 NC_001335.1 + 24135 0.67 0.420137
Target:  5'- uGCUGGCGCUCGcggccaGGCGUgGuucuUCGCg -3'
miRNA:   3'- uCGGCCGCGAGCuag---UCGCGgU----AGUG- -5'
1349 5' -59.2 NC_001335.1 + 13789 0.67 0.420137
Target:  5'- aAGCCagacGGCGCguggcCGAacUCaAGCGCCAaCGCg -3'
miRNA:   3'- -UCGG----CCGCGa----GCU--AG-UCGCGGUaGUG- -5'
1349 5' -59.2 NC_001335.1 + 11820 0.67 0.429538
Target:  5'- uGUCGGUGCcgUUGAUCgcGGCguugucgaacGCCAUCGCg -3'
miRNA:   3'- uCGGCCGCG--AGCUAG--UCG----------CGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 1875 0.66 0.435238
Target:  5'- cGGCCGGggaauacgucccaGCUCGAcaUCAGCGa-GUCGCc -3'
miRNA:   3'- -UCGGCCg------------CGAGCU--AGUCGCggUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 490 0.66 0.439062
Target:  5'- cAGUgGGCaCUCGAgcgAGUGCCAUgCACa -3'
miRNA:   3'- -UCGgCCGcGAGCUag-UCGCGGUA-GUG- -5'
1349 5' -59.2 NC_001335.1 + 49218 0.66 0.439062
Target:  5'- cGUCGuacGCGCUCGGguugCcGCGCCAgucgUCGCg -3'
miRNA:   3'- uCGGC---CGCGAGCUa---GuCGCGGU----AGUG- -5'
1349 5' -59.2 NC_001335.1 + 9880 0.66 0.448706
Target:  5'- uGGCCGGCugugGCuUCGG-CGGUGCCGUgGg -3'
miRNA:   3'- -UCGGCCG----CG-AGCUaGUCGCGGUAgUg -5'
1349 5' -59.2 NC_001335.1 + 35416 0.66 0.458465
Target:  5'- gAGaUCGGCgGCUCGuagaGGUaGCCAUCGCg -3'
miRNA:   3'- -UC-GGCCG-CGAGCuag-UCG-CGGUAGUG- -5'
1349 5' -59.2 NC_001335.1 + 37854 0.66 0.458465
Target:  5'- -uCgGGCGUUCGG-CAGCGUCuUCGCc -3'
miRNA:   3'- ucGgCCGCGAGCUaGUCGCGGuAGUG- -5'
1349 5' -59.2 NC_001335.1 + 41462 0.66 0.458466
Target:  5'- aAGUCGGCGUUCG-UCcuCGCCuacgCGCu -3'
miRNA:   3'- -UCGGCCGCGAGCuAGucGCGGua--GUG- -5'
1349 5' -59.2 NC_001335.1 + 1767 0.66 0.468337
Target:  5'- aGGCCGGCugUCGG--AGCGCCGUUg- -3'
miRNA:   3'- -UCGGCCGcgAGCUagUCGCGGUAGug -5'
1349 5' -59.2 NC_001335.1 + 20743 0.66 0.484354
Target:  5'- uGGCCgacggggcgaugaaGGCGUUCacgcuGUCAGCguucgcaGCCAUCGCa -3'
miRNA:   3'- -UCGG--------------CCGCGAGc----UAGUCG-------CGGUAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.