Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 21242 | 0.67 | 0.258903 |
Target: 5'- uGGCGGAUUGGUCAGagcacuuguggaAGugCGGCUu -3' miRNA: 3'- gCCGUCUGGCCGGUCg-----------UCugGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 22505 | 0.66 | 0.300713 |
Target: 5'- cCGaGCGuAUCGGCgAGCuGGCCGGCa- -3' miRNA: 3'- -GC-CGUcUGGCCGgUCGuCUGGCCGgu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 22606 | 0.71 | 0.129704 |
Target: 5'- uGGCAGA-CGaGUUAGCAGacgugguGCCGGCCAg -3' miRNA: 3'- gCCGUCUgGC-CGGUCGUC-------UGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 24928 | 0.67 | 0.260174 |
Target: 5'- aGGCAuGCCGGCgGGCAGuCgGGgCu -3' miRNA: 3'- gCCGUcUGGCCGgUCGUCuGgCCgGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 26578 | 0.66 | 0.286681 |
Target: 5'- -cGCGGAUCaGCCGG-GGACCGaGCCGa -3' miRNA: 3'- gcCGUCUGGcCGGUCgUCUGGC-CGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 27156 | 0.66 | 0.27317 |
Target: 5'- aGGCGGACaGGCUcaGGguGGCggcaaGGCCGa -3' miRNA: 3'- gCCGUCUGgCCGG--UCguCUGg----CCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 28944 | 0.67 | 0.247076 |
Target: 5'- cCGGCAGccGCCGGCCcaucGCGuuGACgauguagccguugCGGCCAg -3' miRNA: 3'- -GCCGUC--UGGCCGGu---CGU--CUG-------------GCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 31064 | 0.71 | 0.13005 |
Target: 5'- -uGCGGuuCGGCCGGCucGGGCCGGUCu -3' miRNA: 3'- gcCGUCugGCCGGUCG--UCUGGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 31160 | 0.68 | 0.216989 |
Target: 5'- uGGCucaggucaagccugAGACCGGCCcGa--GCCGGCCGa -3' miRNA: 3'- gCCG--------------UCUGGCCGGuCgucUGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 31800 | 0.66 | 0.307926 |
Target: 5'- gCGGCAagccCCGGUCAGCcaGCCGGUUg -3' miRNA: 3'- -GCCGUcu--GGCCGGUCGucUGGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 32145 | 0.69 | 0.173678 |
Target: 5'- cCGGUAGcaguuCCGGCCcGCGaACuCGGCCAg -3' miRNA: 3'- -GCCGUCu----GGCCGGuCGUcUG-GCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 32702 | 0.72 | 0.119715 |
Target: 5'- uCGGCGGugUugaccuuGGCCAGCAcgUCGGCCGg -3' miRNA: 3'- -GCCGUCugG-------CCGGUCGUcuGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 32796 | 0.68 | 0.218636 |
Target: 5'- gGuGCGGAcCCGGCCGaCGuGCUGGCCAa -3' miRNA: 3'- gC-CGUCU-GGCCGGUcGUcUGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 33897 | 0.72 | 0.110744 |
Target: 5'- uGGCGGcguucgugacGCCGGCCGGCaAGACCGaCUAc -3' miRNA: 3'- gCCGUC----------UGGCCGGUCG-UCUGGCcGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 34415 | 0.73 | 0.086759 |
Target: 5'- uCGGUGGAgUGGCCAGCGGcCCGcuGCCGu -3' miRNA: 3'- -GCCGUCUgGCCGGUCGUCuGGC--CGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 38273 | 0.69 | 0.186704 |
Target: 5'- cCGGCuuaguuccgcucGGCCGGCCAGCccgcGACUcGCCAa -3' miRNA: 3'- -GCCGu-----------CUGGCCGGUCGu---CUGGcCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 38353 | 0.71 | 0.126629 |
Target: 5'- gGGCuGGCCGGCCgAGCGGAacuaagccguUCGGUCu -3' miRNA: 3'- gCCGuCUGGCCGG-UCGUCU----------GGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 41413 | 0.66 | 0.286681 |
Target: 5'- cCGGUgccgGGGCCGGC--GCAGACCaggacuagcuGGCCu -3' miRNA: 3'- -GCCG----UCUGGCCGguCGUCUGG----------CCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 43481 | 0.67 | 0.247687 |
Target: 5'- uGGCGGAaggacaagGGCCAGCAGAuCUGGaCUAc -3' miRNA: 3'- gCCGUCUgg------CCGGUCGUCU-GGCC-GGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 44706 | 0.8 | 0.025485 |
Target: 5'- aGGCAGAUCGuCCAGCAGaACUGGCCGu -3' miRNA: 3'- gCCGUCUGGCcGGUCGUC-UGGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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