Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 295 | 0.72 | 0.110744 |
Target: 5'- aGGCgcucaucuaaAGACCGGCCuugaaGGGCCGGUCAu -3' miRNA: 3'- gCCG----------UCUGGCCGGucg--UCUGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 1833 | 0.67 | 0.262732 |
Target: 5'- aCGGCgugGGGCUgugGGCCAGCcugucgaagaucgagGGGCUGGUCGa -3' miRNA: 3'- -GCCG---UCUGG---CCGGUCG---------------UCUGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 2320 | 0.69 | 0.182897 |
Target: 5'- uCGGCaaggagugagcuGGGCCGGCU--CAGGCCGGCg- -3' miRNA: 3'- -GCCG------------UCUGGCCGGucGUCUGGCCGgu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 2574 | 0.7 | 0.148465 |
Target: 5'- uGGCAGGCU-GCCuGCAGAUUGGaCCGg -3' miRNA: 3'- gCCGUCUGGcCGGuCGUCUGGCC-GGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 4091 | 0.69 | 0.178234 |
Target: 5'- aGGCAG-CCGGCggcgaugcaaAGCAGcUCGGCCGc -3' miRNA: 3'- gCCGUCuGGCCGg---------UCGUCuGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 5863 | 0.66 | 0.31527 |
Target: 5'- aGGaucuGCgUGGCCAGCGGGCCGaGCUg -3' miRNA: 3'- gCCguc-UG-GCCGGUCGUCUGGC-CGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 5962 | 0.76 | 0.052818 |
Target: 5'- aGGCAGACCaGGCCcgAGCgggucGGGCUGGCCu -3' miRNA: 3'- gCCGUCUGG-CCGG--UCG-----UCUGGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 9802 | 0.66 | 0.279861 |
Target: 5'- aCGGCAccGCCGaaGCCA-CAG-CCGGCCAu -3' miRNA: 3'- -GCCGUc-UGGC--CGGUcGUCuGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 11374 | 0.69 | 0.182897 |
Target: 5'- uCGGCGugaacGACCccaaGGUCGcGCAGACCGGCg- -3' miRNA: 3'- -GCCGU-----CUGG----CCGGU-CGUCUGGCCGgu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 11513 | 0.76 | 0.054306 |
Target: 5'- gGGCAcGACCGGCCAGaagaucccgcacUGGACCGGCg- -3' miRNA: 3'- gCCGU-CUGGCCGGUC------------GUCUGGCCGgu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 13196 | 0.69 | 0.173678 |
Target: 5'- -aGCGGACCaGGCCgucgaauaccGGCAucCCGGCCAu -3' miRNA: 3'- gcCGUCUGG-CCGG----------UCGUcuGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 14481 | 0.66 | 0.303583 |
Target: 5'- uCGGCuGGugUGGCCgacgcucguccaaccGGUAGcACCGGuCCAg -3' miRNA: 3'- -GCCG-UCugGCCGG---------------UCGUC-UGGCC-GGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 14618 | 0.71 | 0.14083 |
Target: 5'- uCGGUgugaAGACCGGCCAGaccaacgagaAGGCCGuGCUg -3' miRNA: 3'- -GCCG----UCUGGCCGGUCg---------UCUGGC-CGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 16202 | 0.73 | 0.089158 |
Target: 5'- uCGGCAucguGGCCGGUCuGCuGGCCGGUCu -3' miRNA: 3'- -GCCGU----CUGGCCGGuCGuCUGGCCGGu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 16289 | 1.08 | 0.000179 |
Target: 5'- aCGGCAGACCGGCCAGCAGACCGGCCAc -3' miRNA: 3'- -GCCGUCUGGCCGGUCGUCUGGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 16856 | 0.69 | 0.199563 |
Target: 5'- -aGCGGACCGccgagcugucccaucGCCuGCAGACCGGacuCCAu -3' miRNA: 3'- gcCGUCUGGC---------------CGGuCGUCUGGCC---GGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 17243 | 0.66 | 0.307926 |
Target: 5'- -uGCAGcACCGcGCCuGC-GACCuGGCCGa -3' miRNA: 3'- gcCGUC-UGGC-CGGuCGuCUGG-CCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 17542 | 0.71 | 0.13005 |
Target: 5'- uGGCc-AUCGGCCuGCAGGCCGGUa- -3' miRNA: 3'- gCCGucUGGCCGGuCGUCUGGCCGgu -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 17596 | 0.66 | 0.279861 |
Target: 5'- uCGGCGGGauGGUCAGCGcAgCGGUCAa -3' miRNA: 3'- -GCCGUCUggCCGGUCGUcUgGCCGGU- -5' |
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1355 | 3' | -63.6 | NC_001335.1 | + | 17635 | 0.71 | 0.137148 |
Target: 5'- aGGCccuGGAcgagauccuuaCCGGCCuGCAGGCCgauGGCCAu -3' miRNA: 3'- gCCG---UCU-----------GGCCGGuCGUCUGG---CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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