miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1355 3' -63.6 NC_001335.1 + 50205 0.66 0.307926
Target:  5'- gGGCAggagaagccuuGACCGGagGGCAGGCCGauGCUg -3'
miRNA:   3'- gCCGU-----------CUGGCCggUCGUCUGGC--CGGu -5'
1355 3' -63.6 NC_001335.1 + 48813 0.67 0.241631
Target:  5'- gCGGC-GACCGGaCgCGGUAGcuucuCCGGUCAg -3'
miRNA:   3'- -GCCGuCUGGCC-G-GUCGUCu----GGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 48381 0.66 0.286681
Target:  5'- uGGCccacgccaagGGugUGGuUCGGCcGGCCGGCCGc -3'
miRNA:   3'- gCCG----------UCugGCC-GGUCGuCUGGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 48293 0.67 0.238058
Target:  5'- gCGGCcGGCCGGCCGaaccacacccuuggcGUGGGCCagcaggacguGGCCGc -3'
miRNA:   3'- -GCCGuCUGGCCGGU---------------CGUCUGG----------CCGGU- -5'
1355 3' -63.6 NC_001335.1 + 47446 0.7 0.152423
Target:  5'- --uCAGGuuGGCCAGCAGugCauuGGCCAc -3'
miRNA:   3'- gccGUCUggCCGGUCGUCugG---CCGGU- -5'
1355 3' -63.6 NC_001335.1 + 46920 0.66 0.300713
Target:  5'- cCGGCGuACCGGCCAcGUcu-UCGGCCu -3'
miRNA:   3'- -GCCGUcUGGCCGGU-CGucuGGCCGGu -5'
1355 3' -63.6 NC_001335.1 + 46496 0.7 0.144602
Target:  5'- cCGGCGGuagcucuugaGCUGGCCAGCGGugcucuUCGGCUu -3'
miRNA:   3'- -GCCGUC----------UGGCCGGUCGUCu-----GGCCGGu -5'
1355 3' -63.6 NC_001335.1 + 44706 0.8 0.025485
Target:  5'- aGGCAGAUCGuCCAGCAGaACUGGCCGu -3'
miRNA:   3'- gCCGUCUGGCcGGUCGUC-UGGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 43481 0.67 0.247687
Target:  5'- uGGCGGAaggacaagGGCCAGCAGAuCUGGaCUAc -3'
miRNA:   3'- gCCGUCUgg------CCGGUCGUCU-GGCC-GGU- -5'
1355 3' -63.6 NC_001335.1 + 41413 0.66 0.286681
Target:  5'- cCGGUgccgGGGCCGGC--GCAGACCaggacuagcuGGCCu -3'
miRNA:   3'- -GCCG----UCUGGCCGguCGUCUGG----------CCGGu -5'
1355 3' -63.6 NC_001335.1 + 38353 0.71 0.126629
Target:  5'- gGGCuGGCCGGCCgAGCGGAacuaagccguUCGGUCu -3'
miRNA:   3'- gCCGuCUGGCCGG-UCGUCU----------GGCCGGu -5'
1355 3' -63.6 NC_001335.1 + 38273 0.69 0.186704
Target:  5'- cCGGCuuaguuccgcucGGCCGGCCAGCccgcGACUcGCCAa -3'
miRNA:   3'- -GCCGu-----------CUGGCCGGUCGu---CUGGcCGGU- -5'
1355 3' -63.6 NC_001335.1 + 34415 0.73 0.086759
Target:  5'- uCGGUGGAgUGGCCAGCGGcCCGcuGCCGu -3'
miRNA:   3'- -GCCGUCUgGCCGGUCGUCuGGC--CGGU- -5'
1355 3' -63.6 NC_001335.1 + 33897 0.72 0.110744
Target:  5'- uGGCGGcguucgugacGCCGGCCGGCaAGACCGaCUAc -3'
miRNA:   3'- gCCGUC----------UGGCCGGUCG-UCUGGCcGGU- -5'
1355 3' -63.6 NC_001335.1 + 32796 0.68 0.218636
Target:  5'- gGuGCGGAcCCGGCCGaCGuGCUGGCCAa -3'
miRNA:   3'- gC-CGUCU-GGCCGGUcGUcUGGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 32702 0.72 0.119715
Target:  5'- uCGGCGGugUugaccuuGGCCAGCAcgUCGGCCGg -3'
miRNA:   3'- -GCCGUCugG-------CCGGUCGUcuGGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 32145 0.69 0.173678
Target:  5'- cCGGUAGcaguuCCGGCCcGCGaACuCGGCCAg -3'
miRNA:   3'- -GCCGUCu----GGCCGGuCGUcUG-GCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 31800 0.66 0.307926
Target:  5'- gCGGCAagccCCGGUCAGCcaGCCGGUUg -3'
miRNA:   3'- -GCCGUcu--GGCCGGUCGucUGGCCGGu -5'
1355 3' -63.6 NC_001335.1 + 31160 0.68 0.216989
Target:  5'- uGGCucaggucaagccugAGACCGGCCcGa--GCCGGCCGa -3'
miRNA:   3'- gCCG--------------UCUGGCCGGuCgucUGGCCGGU- -5'
1355 3' -63.6 NC_001335.1 + 31064 0.71 0.13005
Target:  5'- -uGCGGuuCGGCCGGCucGGGCCGGUCu -3'
miRNA:   3'- gcCGUCugGCCGGUCG--UCUGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.