Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1363 | 3' | -55 | NC_001335.1 | + | 19548 | 1.08 | 0.001212 |
Target: 5'- cUCGAUGAACUCCCACUCGAGCACCCGc -3' miRNA: 3'- -AGCUACUUGAGGGUGAGCUCGUGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 6187 | 0.71 | 0.446955 |
Target: 5'- gUUGAUGAugUggUGCUUGAGCACCUGg -3' miRNA: 3'- -AGCUACUugAggGUGAGCUCGUGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 6153 | 0.7 | 0.466784 |
Target: 5'- aCGAUG-GCUCCCug-CGAGUAgCCGg -3' miRNA: 3'- aGCUACuUGAGGGugaGCUCGUgGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 31050 | 0.69 | 0.524548 |
Target: 5'- cUCGGUGAGCUUCUugcgguucggccgGCUCGGGCcggucucaggcuugACCUGa -3' miRNA: 3'- -AGCUACUUGAGGG-------------UGAGCUCG--------------UGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 31992 | 0.69 | 0.528784 |
Target: 5'- aCGGUGAcGCUCCaGCUCGgucAGCACCg- -3' miRNA: 3'- aGCUACU-UGAGGgUGAGC---UCGUGGgc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 20915 | 0.68 | 0.582643 |
Target: 5'- gUCGGUccucGGCUaCCCGgUCGAGCACCa- -3' miRNA: 3'- -AGCUAc---UUGA-GGGUgAGCUCGUGGgc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 44449 | 0.68 | 0.582643 |
Target: 5'- cUCGAUGGAUgggUCgaACUCGAGCACUa- -3' miRNA: 3'- -AGCUACUUG---AGggUGAGCUCGUGGgc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 26166 | 0.68 | 0.615513 |
Target: 5'- cUCGGggccugGAgcccGCUgCCGCUUGAcuGCGCCCGa -3' miRNA: 3'- -AGCUa-----CU----UGAgGGUGAGCU--CGUGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 398 | 0.68 | 0.634213 |
Target: 5'- -gGGUGAcucaacugugcaugGCaCUCGCUCGAGUGCCCa -3' miRNA: 3'- agCUACU--------------UGaGGGUGAGCUCGUGGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 30207 | 0.68 | 0.637513 |
Target: 5'- cUCGAUGAACacgucUCCCAgCUCcaccGGCACCa- -3' miRNA: 3'- -AGCUACUUG-----AGGGU-GAGc---UCGUGGgc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 13663 | 0.68 | 0.637513 |
Target: 5'- gCGAUGucGACUUCCACaCGAuccucaacGCGCCCa -3' miRNA: 3'- aGCUAC--UUGAGGGUGaGCU--------CGUGGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 22000 | 0.67 | 0.659494 |
Target: 5'- aCGAUGGagaacGCUCUCggccuGCUCGAagaGCACCUGc -3' miRNA: 3'- aGCUACU-----UGAGGG-----UGAGCU---CGUGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 34008 | 0.67 | 0.659494 |
Target: 5'- cUCGGUGGGCUCgCUucuGCUUGGGCAugUCCu -3' miRNA: 3'- -AGCUACUUGAG-GG---UGAGCUCGU--GGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 32241 | 0.67 | 0.659494 |
Target: 5'- cUCGAauccGAugUCCCGCaac-GCACCCGg -3' miRNA: 3'- -AGCUa---CUugAGGGUGagcuCGUGGGC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 13141 | 0.67 | 0.692248 |
Target: 5'- gCGGUGGcCUucuugacguuucCCCACUCGAuGCGCCa- -3' miRNA: 3'- aGCUACUuGA------------GGGUGAGCU-CGUGGgc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 10791 | 0.66 | 0.703064 |
Target: 5'- cCGAc-AAC-CCCACUCccgaGAGCACCCc -3' miRNA: 3'- aGCUacUUGaGGGUGAG----CUCGUGGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 5053 | 0.66 | 0.723416 |
Target: 5'- gCGGUugccgugGGACUCCCAgUCGA-CGCCuCGg -3' miRNA: 3'- aGCUA-------CUUGAGGGUgAGCUcGUGG-GC- -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 13478 | 0.66 | 0.724479 |
Target: 5'- aCGGUGGcguCUCCgAa--GAGCGCCCa -3' miRNA: 3'- aGCUACUu--GAGGgUgagCUCGUGGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 48865 | 0.66 | 0.745526 |
Target: 5'- aCGAUGAGCUUgaaCACUUGGuGCcuACCCu -3' miRNA: 3'- aGCUACUUGAGg--GUGAGCU-CG--UGGGc -5' |
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1363 | 3' | -55 | NC_001335.1 | + | 39223 | 0.66 | 0.745526 |
Target: 5'- gUCGcacagGGGCUCCCGCUcacgCGAGaCGCCa- -3' miRNA: 3'- -AGCua---CUUGAGGGUGA----GCUC-GUGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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