Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1363 | 5' | -62 | NC_001335.1 | + | 50844 | 0.73 | 0.11928 |
Target: 5'- aGCCAGGCCGa-CAGGCcGGgcGUCaCCg -3' miRNA: 3'- -UGGUCCGGCgcGUCCG-CCuuCAGcGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 48353 | 0.67 | 0.293651 |
Target: 5'- gGCC-GGCCGCGaCAagguacGGCGcGAG-CGCCg -3' miRNA: 3'- -UGGuCCGGCGC-GU------CCGCcUUCaGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 46250 | 0.66 | 0.36179 |
Target: 5'- cGCCAGcgcgugguucaucGCCGCGUu-GCGGccGUCGCg -3' miRNA: 3'- -UGGUC-------------CGGCGCGucCGCCuuCAGCGg -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 46197 | 0.75 | 0.093134 |
Target: 5'- uACCGGaGCgcaGCGCAcaucgccgagcacGGCGGAaaAGUCGCCg -3' miRNA: 3'- -UGGUC-CGg--CGCGU-------------CCGCCU--UCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 42399 | 0.72 | 0.139732 |
Target: 5'- aGCCGGguGCCGCGCAGcuugaGGAucuucauGGUCGCCc -3' miRNA: 3'- -UGGUC--CGGCGCGUCcg---CCU-------UCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 38324 | 0.66 | 0.353611 |
Target: 5'- gGCUGGGCuucCGgGCAGGCuuucucuguaccgGGAcGUUGCCu -3' miRNA: 3'- -UGGUCCG---GCgCGUCCG-------------CCUuCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 36742 | 0.66 | 0.346361 |
Target: 5'- aACCGGGCCGuCGUAGaccuggcgcaGCGGcuccAGgaacCGCCg -3' miRNA: 3'- -UGGUCCGGC-GCGUC----------CGCCu---UCa---GCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 35864 | 0.67 | 0.308046 |
Target: 5'- --gAGGCUcUGCAGG-GGGAGUCGaCCa -3' miRNA: 3'- uggUCCGGcGCGUCCgCCUUCAGC-GG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 32903 | 0.7 | 0.202126 |
Target: 5'- gGCuCGGGCUGgGCagGGGCGGugcuccacGGUCGUCg -3' miRNA: 3'- -UG-GUCCGGCgCG--UCCGCCu-------UCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 32664 | 0.68 | 0.266449 |
Target: 5'- gGCCAGcagcagucucgcGCCcCGCAGGCagcucaGGAAG-CGCCu -3' miRNA: 3'- -UGGUC------------CGGcGCGUCCG------CCUUCaGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 29161 | 0.68 | 0.286653 |
Target: 5'- cACCuGGGCUGCGuCAgcggucaucuGGUGGAGGUcCGCa -3' miRNA: 3'- -UGG-UCCGGCGC-GU----------CCGCCUUCA-GCGg -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 25268 | 0.66 | 0.370939 |
Target: 5'- aGCCuGGCU-CGCGGGCGaGAAG-CGgCu -3' miRNA: 3'- -UGGuCCGGcGCGUCCGC-CUUCaGCgG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 23839 | 0.66 | 0.343969 |
Target: 5'- cACCGGGCUcgucggagcuggagGCGCA-GCGGGAGcUgGCUc -3' miRNA: 3'- -UGGUCCGG--------------CGCGUcCGCCUUC-AgCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 22116 | 0.67 | 0.330636 |
Target: 5'- cACCGGcGCUGUGCAGGCGaucauGAAcgCGCUc -3' miRNA: 3'- -UGGUC-CGGCGCGUCCGC-----CUUcaGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 19512 | 1.11 | 0.000147 |
Target: 5'- gACCAGGCCGCGCAGGCGGAAGUCGCCa -3' miRNA: 3'- -UGGUCCGGCGCGUCCGCCUUCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 16252 | 0.66 | 0.354423 |
Target: 5'- uUCGGaGCCgGCGCuGGCGu-AGUCGCg -3' miRNA: 3'- uGGUC-CGG-CGCGuCCGCcuUCAGCGg -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 15490 | 0.69 | 0.237727 |
Target: 5'- -aCAGGUCGCGCAGGUcuacccgguaguacuGGAgcaggucugcgaGGaUCGCCc -3' miRNA: 3'- ugGUCCGGCGCGUCCG---------------CCU------------UC-AGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 12185 | 0.69 | 0.247412 |
Target: 5'- gACCuGGCCccagacgaGCuGGCGGAAGUCaCCc -3' miRNA: 3'- -UGGuCCGGcg------CGuCCGCCUUCAGcGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 10259 | 0.66 | 0.382809 |
Target: 5'- gAUCcGGCCcCGCagaucgugcagggcuGGGCGaGGGUCGCCa -3' miRNA: 3'- -UGGuCCGGcGCG---------------UCCGCcUUCAGCGG- -5' |
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1363 | 5' | -62 | NC_001335.1 | + | 10253 | 0.66 | 0.362615 |
Target: 5'- gGCCAGaGCCaacuuagagGuCGCAcucGGCGGAgAGUCgGCCu -3' miRNA: 3'- -UGGUC-CGG---------C-GCGU---CCGCCU-UCAG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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