Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1363 | 5' | -62 | NC_001335.1 | + | 453 | 0.71 | 0.167259 |
Target: 5'- cACCccucuauaGGGCCGCGCAcuGGCGcGGccuugagauccggcGGUUGCCg -3' miRNA: 3'- -UGG--------UCCGGCGCGU--CCGC-CU--------------UCAGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 612 | 0.7 | 0.197 |
Target: 5'- uCCAGGCCGCGagaUAGGCcggcacGAAGUCggucgGCCg -3' miRNA: 3'- uGGUCCGGCGC---GUCCGc-----CUUCAG-----CGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 1156 | 0.73 | 0.129306 |
Target: 5'- gAUCGGGCgGCGUAGGCGGc-GUCGg- -3' miRNA: 3'- -UGGUCCGgCGCGUCCGCCuuCAGCgg -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 1701 | 0.71 | 0.167259 |
Target: 5'- aACCAGGCguccucgaggagggCGCGUucGGuCGGGGuGUCGCCa -3' miRNA: 3'- -UGGUCCG--------------GCGCGu-CC-GCCUU-CAGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 5708 | 0.77 | 0.065227 |
Target: 5'- gGCCAGGCagaGUGCcgAGGCuGAAGUCGCg -3' miRNA: 3'- -UGGUCCGg--CGCG--UCCGcCUUCAGCGg -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 5957 | 0.69 | 0.241321 |
Target: 5'- gACCAGGCCcgaGCGGGuCGGGcuGGccugUGCCg -3' miRNA: 3'- -UGGUCCGGcg-CGUCC-GCCU--UCa---GCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 6976 | 0.66 | 0.370939 |
Target: 5'- cACC--GCCGCGCcugcuuGGCGGAAcucuGUgGCCc -3' miRNA: 3'- -UGGucCGGCGCGu-----CCGCCUU----CAgCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 7686 | 0.66 | 0.362615 |
Target: 5'- uAUC-GGCaGC-CAGGUGGA-GUCGCCu -3' miRNA: 3'- -UGGuCCGgCGcGUCCGCCUuCAGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 9660 | 0.84 | 0.017298 |
Target: 5'- gGCCuuGGCCGCGUAGGUGGGAGugcucgggucUCGCCa -3' miRNA: 3'- -UGGu-CCGGCGCGUCCGCCUUC----------AGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 10253 | 0.66 | 0.362615 |
Target: 5'- gGCCAGaGCCaacuuagagGuCGCAcucGGCGGAgAGUCgGCCu -3' miRNA: 3'- -UGGUC-CGG---------C-GCGU---CCGCCU-UCAG-CGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 10259 | 0.66 | 0.382809 |
Target: 5'- gAUCcGGCCcCGCagaucgugcagggcuGGGCGaGGGUCGCCa -3' miRNA: 3'- -UGGuCCGGcGCG---------------UCCGCcUUCAGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 12185 | 0.69 | 0.247412 |
Target: 5'- gACCuGGCCccagacgaGCuGGCGGAAGUCaCCc -3' miRNA: 3'- -UGGuCCGGcg------CGuCCGCCUUCAGcGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 15490 | 0.69 | 0.237727 |
Target: 5'- -aCAGGUCGCGCAGGUcuacccgguaguacuGGAgcaggucugcgaGGaUCGCCc -3' miRNA: 3'- ugGUCCGGCGCGUCCG---------------CCU------------UC-AGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 16252 | 0.66 | 0.354423 |
Target: 5'- uUCGGaGCCgGCGCuGGCGu-AGUCGCg -3' miRNA: 3'- uGGUC-CGG-CGCGuCCGCcuUCAGCGg -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 19512 | 1.11 | 0.000147 |
Target: 5'- gACCAGGCCGCGCAGGCGGAAGUCGCCa -3' miRNA: 3'- -UGGUCCGGCGCGUCCGCCUUCAGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 22116 | 0.67 | 0.330636 |
Target: 5'- cACCGGcGCUGUGCAGGCGaucauGAAcgCGCUc -3' miRNA: 3'- -UGGUC-CGGCGCGUCCGC-----CUUcaGCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 23839 | 0.66 | 0.343969 |
Target: 5'- cACCGGGCUcgucggagcuggagGCGCA-GCGGGAGcUgGCUc -3' miRNA: 3'- -UGGUCCGG--------------CGCGUcCGCCUUC-AgCGG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 25268 | 0.66 | 0.370939 |
Target: 5'- aGCCuGGCU-CGCGGGCGaGAAG-CGgCu -3' miRNA: 3'- -UGGuCCGGcGCGUCCGC-CUUCaGCgG- -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 29161 | 0.68 | 0.286653 |
Target: 5'- cACCuGGGCUGCGuCAgcggucaucuGGUGGAGGUcCGCa -3' miRNA: 3'- -UGG-UCCGGCGC-GU----------CCGCCUUCA-GCGg -5' |
|||||||
1363 | 5' | -62 | NC_001335.1 | + | 32664 | 0.68 | 0.266449 |
Target: 5'- gGCCAGcagcagucucgcGCCcCGCAGGCagcucaGGAAG-CGCCu -3' miRNA: 3'- -UGGUC------------CGGcGCGUCCG------CCUUCaGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home