Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1364 | 5' | -55.6 | NC_001335.1 | + | 430 | 0.77 | 0.175823 |
Target: 5'- uGGCGCGGcCUUgaGAUCCGGCGGUuGCCg -3' miRNA: 3'- -CUGCGCUaGAGg-CUAGGUCGUCA-CGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 1302 | 0.7 | 0.433587 |
Target: 5'- uGACGC---CUCCGGUaCCGGCGcUGCCg -3' miRNA: 3'- -CUGCGcuaGAGGCUA-GGUCGUcACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 1823 | 0.69 | 0.493555 |
Target: 5'- uGACGCGGUCcuugaCCGAgUCCuucauguagAGCuuGGUGCCg -3' miRNA: 3'- -CUGCGCUAGa----GGCU-AGG---------UCG--UCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 4813 | 0.67 | 0.622654 |
Target: 5'- ---aCGGUUUCCGAcCCAGuCGGUGCg -3' miRNA: 3'- cugcGCUAGAGGCUaGGUC-GUCACGg -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 5584 | 0.69 | 0.524935 |
Target: 5'- -cCGCcccaGAUCaggaCGAUgcCCAGCAGUGCCg -3' miRNA: 3'- cuGCG----CUAGag--GCUA--GGUCGUCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 5870 | 0.67 | 0.644688 |
Target: 5'- cACGUugagGAUCUgCGuggCCAGCGG-GCCg -3' miRNA: 3'- cUGCG----CUAGAgGCua-GGUCGUCaCGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 8491 | 0.75 | 0.216143 |
Target: 5'- uGCGgGGUCUUCGAUCUccuccauaccggggAGCGGUGCUg -3' miRNA: 3'- cUGCgCUAGAGGCUAGG--------------UCGUCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 9270 | 0.66 | 0.688533 |
Target: 5'- gGACGCuGAgggcaaGAUCCAGCAGUucucugcaGCCg -3' miRNA: 3'- -CUGCG-CUagagg-CUAGGUCGUCA--------CGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 9888 | 0.68 | 0.545197 |
Target: 5'- cGACuCGAUggCCGGcuguggcUUCGGCGGUGCCg -3' miRNA: 3'- -CUGcGCUAgaGGCU-------AGGUCGUCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 11465 | 0.71 | 0.396042 |
Target: 5'- aGCGgagaaGAUCUCCaucGUCCAGCAGUucGCCc -3' miRNA: 3'- cUGCg----CUAGAGGc--UAGGUCGUCA--CGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 11590 | 0.67 | 0.611644 |
Target: 5'- uGCGgGAUCuUCUGG-CCGGUcGUGCCc -3' miRNA: 3'- cUGCgCUAG-AGGCUaGGUCGuCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 12547 | 0.72 | 0.342983 |
Target: 5'- uGCGCGGUUUCCGGggcaccuUCCAGCcgccAGUGgCg -3' miRNA: 3'- cUGCGCUAGAGGCU-------AGGUCG----UCACgG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 12611 | 0.67 | 0.622654 |
Target: 5'- uGGCGCuGAUCgagcgCCGGcUCCAGCAGaucgaGCg -3' miRNA: 3'- -CUGCG-CUAGa----GGCU-AGGUCGUCa----CGg -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 13003 | 0.72 | 0.352163 |
Target: 5'- uGACuGCGAUCacgaagCUGAUCCuccGguGUGCCg -3' miRNA: 3'- -CUG-CGCUAGa-----GGCUAGGu--CguCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 13054 | 0.72 | 0.335602 |
Target: 5'- aACGCGuugacCCGAUCCGGCguaaccgccugAGUGCCa -3' miRNA: 3'- cUGCGCuaga-GGCUAGGUCG-----------UCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 16151 | 0.69 | 0.514386 |
Target: 5'- cGGCGUcaucgccuaGAUCUCCGAgcccCCGGC--UGCCg -3' miRNA: 3'- -CUGCG---------CUAGAGGCUa---GGUCGucACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 19202 | 0.66 | 0.666676 |
Target: 5'- --aGCGAUCUgcuccUCGcgCCGGuCGGUGUCg -3' miRNA: 3'- cugCGCUAGA-----GGCuaGGUC-GUCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 20961 | 1.11 | 0.000633 |
Target: 5'- cGACGCGAUCUCCGAUCCAGCAGUGCCc -3' miRNA: 3'- -CUGCGCUAGAGGCUAGGUCGUCACGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 23182 | 0.67 | 0.633671 |
Target: 5'- cGACGCcGUCgUCCGAccauguggCCAGCAcGggGCCg -3' miRNA: 3'- -CUGCGcUAG-AGGCUa-------GGUCGU-Ca-CGG- -5' |
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1364 | 5' | -55.6 | NC_001335.1 | + | 29376 | 0.7 | 0.453118 |
Target: 5'- uGCGCGAggUCCGcgCCuGCAGUGg- -3' miRNA: 3'- cUGCGCUagAGGCuaGGuCGUCACgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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