Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1370 | 5' | -61.5 | NC_001335.1 | + | 25011 | 1.1 | 0.000189 |
Target: 5'- gUAGGAAGCACCCGACUGCCCGCCGGCa -3' miRNA: 3'- -AUCCUUCGUGGGCUGACGGGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 1366 | 0.77 | 0.064607 |
Target: 5'- gUGGGggGCACCgGgguguuggggcuGCUGCcaccgCCGCCGGCu -3' miRNA: 3'- -AUCCuuCGUGGgC------------UGACG-----GGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 32631 | 0.76 | 0.075156 |
Target: 5'- cAGGAAGCGCCUGguggcgagaagcgguACUGCCaGCaCGGCg -3' miRNA: 3'- aUCCUUCGUGGGC---------------UGACGGgCG-GCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 41763 | 0.75 | 0.087588 |
Target: 5'- aUGGGAAGUggcucagcagaacAUCUGugUGCCCGCCaGCg -3' miRNA: 3'- -AUCCUUCG-------------UGGGCugACGGGCGGcCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 30018 | 0.73 | 0.118858 |
Target: 5'- gAGcGAGUGCCCGAa--CCCGCCGGCc -3' miRNA: 3'- aUCcUUCGUGGGCUgacGGGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 38899 | 0.73 | 0.132488 |
Target: 5'- cGGGccaucGAGUACCUG-CUGaaCCCGCCGGCc -3' miRNA: 3'- aUCC-----UUCGUGGGCuGAC--GGGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 46598 | 0.7 | 0.207743 |
Target: 5'- cGGGGAGUACaagCCGAagaGCaCCGCUGGCc -3' miRNA: 3'- aUCCUUCGUG---GGCUga-CG-GGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 44407 | 0.69 | 0.224363 |
Target: 5'- gGGGAcGUACCUGAaccCgCCGCCGGCc -3' miRNA: 3'- aUCCUuCGUGGGCUgacG-GGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 30746 | 0.68 | 0.254561 |
Target: 5'- gGGGAGGCauuGCCUGACggcaagGCCCcuaCCGGg -3' miRNA: 3'- aUCCUUCG---UGGGCUGa-----CGGGc--GGCCg -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 26237 | 0.68 | 0.260338 |
Target: 5'- gUAGGAGGCAcaaaaaaauacccCCCGAgcCaGCCCGaaGGCc -3' miRNA: 3'- -AUCCUUCGU-------------GGGCU--GaCGGGCggCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 4176 | 0.68 | 0.28037 |
Target: 5'- -cGGccGAGCugCuuugcaucgccgcCGGCUGCCuCGCCGGUc -3' miRNA: 3'- auCC--UUCGugG-------------GCUGACGG-GCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 31407 | 0.68 | 0.288016 |
Target: 5'- gAGGAagaAGCACCUGAaaGCUgCGCUGGg -3' miRNA: 3'- aUCCU---UCGUGGGCUgaCGG-GCGGCCg -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 5970 | 0.67 | 0.295108 |
Target: 5'- -cGGcAGCGgcguuCCCGAUUGgCCGUCGGUc -3' miRNA: 3'- auCCuUCGU-----GGGCUGACgGGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 12720 | 0.67 | 0.301607 |
Target: 5'- gGGGAuccGGCGCuuGAucaugcgcucgauCUGCUggaGCCGGCg -3' miRNA: 3'- aUCCU---UCGUGggCU-------------GACGGg--CGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 46395 | 0.67 | 0.309699 |
Target: 5'- -cGGuaGAGCACCaacGCUccCCCGCCGGCc -3' miRNA: 3'- auCC--UUCGUGGgc-UGAc-GGGCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 3040 | 0.67 | 0.324833 |
Target: 5'- ---cGAGCACCCG-CUGaCCCGacaGGCg -3' miRNA: 3'- auccUUCGUGGGCuGAC-GGGCgg-CCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 33805 | 0.67 | 0.332603 |
Target: 5'- --cGAGGUAgUCGGucUUGCCgGCCGGCg -3' miRNA: 3'- aucCUUCGUgGGCU--GACGGgCGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 32984 | 0.66 | 0.347741 |
Target: 5'- -cGuGGAGCACCgCccCUGCCCagcccgaGCCGGCc -3' miRNA: 3'- auC-CUUCGUGG-GcuGACGGG-------CGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 26086 | 0.66 | 0.356727 |
Target: 5'- -uGGggGUAggCGugUGCCacguuGCCGGCc -3' miRNA: 3'- auCCuuCGUggGCugACGGg----CGGCCG- -5' |
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1370 | 5' | -61.5 | NC_001335.1 | + | 32424 | 0.66 | 0.356727 |
Target: 5'- aGGGGAGCuguagaaggGCUUcGCUGCCCcCUGGCu -3' miRNA: 3'- aUCCUUCG---------UGGGcUGACGGGcGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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