miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1377 5' -52.6 NC_001335.1 + 29581 1.11 0.001211
Target:  5'- gGUCGAAGAUGGCAACGAGCUUGCCGCc -3'
miRNA:   3'- -CAGCUUCUACCGUUGCUCGAACGGCG- -5'
1377 5' -52.6 NC_001335.1 + 12897 0.77 0.244615
Target:  5'- aUCGAGGAUGGU---GAGCUUGCCuuGCg -3'
miRNA:   3'- cAGCUUCUACCGuugCUCGAACGG--CG- -5'
1377 5' -52.6 NC_001335.1 + 25987 0.76 0.301483
Target:  5'- -gCGAccGUGGCGACGAGCgucagGCCGUc -3'
miRNA:   3'- caGCUucUACCGUUGCUCGaa---CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 29061 0.73 0.454072
Target:  5'- --aGAAGcUGGCGAUGgaAGCUgGCCGCa -3'
miRNA:   3'- cagCUUCuACCGUUGC--UCGAaCGGCG- -5'
1377 5' -52.6 NC_001335.1 + 45506 0.72 0.485099
Target:  5'- aGUgGAAGAcgUGGCAugACGAGCccgcGCCGUu -3'
miRNA:   3'- -CAgCUUCU--ACCGU--UGCUCGaa--CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 24781 0.72 0.495666
Target:  5'- uUCGGAGA--GCugauCGAGCUUcGCCGCa -3'
miRNA:   3'- cAGCUUCUacCGuu--GCUCGAA-CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 13677 0.72 0.506335
Target:  5'- cGUCGGugaugcGGGUGGU--CGAGUUcUGCCGCg -3'
miRNA:   3'- -CAGCU------UCUACCGuuGCUCGA-ACGGCG- -5'
1377 5' -52.6 NC_001335.1 + 38755 0.71 0.517101
Target:  5'- -gCGGAGAccGGCGA-GGGCUUcGCCGCc -3'
miRNA:   3'- caGCUUCUa-CCGUUgCUCGAA-CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 24219 0.71 0.561001
Target:  5'- -gCGAAGAaccacgccUGGCcGCGAGCgccagcaccGCCGCu -3'
miRNA:   3'- caGCUUCU--------ACCGuUGCUCGaa-------CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 4831 0.7 0.583345
Target:  5'- -cCGAGGcgGGcCAGCGGcCUUGCCGa -3'
miRNA:   3'- caGCUUCuaCC-GUUGCUcGAACGGCg -5'
1377 5' -52.6 NC_001335.1 + 42260 0.7 0.594585
Target:  5'- gGUCGAGGAUuGCGACGAuCUgGUCGUa -3'
miRNA:   3'- -CAGCUUCUAcCGUUGCUcGAaCGGCG- -5'
1377 5' -52.6 NC_001335.1 + 42722 0.7 0.594585
Target:  5'- gGUCGGAGAUGG-AACGGGCaggaguucgUGaCGCg -3'
miRNA:   3'- -CAGCUUCUACCgUUGCUCGa--------ACgGCG- -5'
1377 5' -52.6 NC_001335.1 + 18690 0.7 0.605859
Target:  5'- aGUCcGGGGUGGUGACguaGAGCUUGCagguGCg -3'
miRNA:   3'- -CAGcUUCUACCGUUG---CUCGAACGg---CG- -5'
1377 5' -52.6 NC_001335.1 + 16979 0.7 0.605859
Target:  5'- -gUGAcGAUGGgAGCGAGCUgugUGCCcaGCg -3'
miRNA:   3'- caGCUuCUACCgUUGCUCGA---ACGG--CG- -5'
1377 5' -52.6 NC_001335.1 + 11838 0.7 0.605859
Target:  5'- --gGAAGGUcGGgAACGGGCUgucggUGCCGUu -3'
miRNA:   3'- cagCUUCUA-CCgUUGCUCGA-----ACGGCG- -5'
1377 5' -52.6 NC_001335.1 + 2126 0.7 0.617158
Target:  5'- uGUCG-AGGUGGCcccuCGGGCguucGUCGCa -3'
miRNA:   3'- -CAGCuUCUACCGuu--GCUCGaa--CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 39617 0.69 0.639785
Target:  5'- --gGAGGAUGcCAGCccGCUUGCCGUa -3'
miRNA:   3'- cagCUUCUACcGUUGcuCGAACGGCG- -5'
1377 5' -52.6 NC_001335.1 + 13177 0.69 0.662382
Target:  5'- aUCGAcuccGAUGGCAACaAGCggaccagGCCGUc -3'
miRNA:   3'- cAGCUu---CUACCGUUGcUCGaa-----CGGCG- -5'
1377 5' -52.6 NC_001335.1 + 31884 0.69 0.68486
Target:  5'- aUCGucaaccGGcUGGCuGACcgGGGCUUGCCGCg -3'
miRNA:   3'- cAGCu-----UCuACCG-UUG--CUCGAACGGCG- -5'
1377 5' -52.6 NC_001335.1 + 6533 0.68 0.696025
Target:  5'- aGUCGAcccaaGGCc-CGAGCUgGCCGCa -3'
miRNA:   3'- -CAGCUucua-CCGuuGCUCGAaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.