Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 4831 | 0.7 | 0.583345 |
Target: 5'- -cCGAGGcgGGcCAGCGGcCUUGCCGa -3' miRNA: 3'- caGCUUCuaCC-GUUGCUcGAACGGCg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 13177 | 0.69 | 0.662382 |
Target: 5'- aUCGAcuccGAUGGCAACaAGCggaccagGCCGUc -3' miRNA: 3'- cAGCUu---CUACCGUUGcUCGaa-----CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 6533 | 0.68 | 0.696025 |
Target: 5'- aGUCGAcccaaGGCc-CGAGCUgGCCGCa -3' miRNA: 3'- -CAGCUucua-CCGuuGCUCGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 32271 | 0.66 | 0.820426 |
Target: 5'- aUCGAucucGGUGGCAGCGAucaGUUUGgcuuucauacucuCCGCu -3' miRNA: 3'- cAGCUu---CUACCGUUGCU---CGAAC-------------GGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 1175 | 0.68 | 0.729079 |
Target: 5'- cGUCGGAGGcgGGgGugGAGCU-GCagggaGCa -3' miRNA: 3'- -CAGCUUCUa-CCgUugCUCGAaCGg----CG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 39617 | 0.69 | 0.639785 |
Target: 5'- --gGAGGAUGcCAGCccGCUUGCCGUa -3' miRNA: 3'- cagCUUCUACcGUUGcuCGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 28505 | 0.68 | 0.729079 |
Target: 5'- aUCGGAGGUGGag-UGAGCaUUGCCu- -3' miRNA: 3'- cAGCUUCUACCguuGCUCG-AACGGcg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 8893 | 0.66 | 0.80204 |
Target: 5'- aGUCGcauaugacaAGGAgGGCAACGAGauucagGCUGCc -3' miRNA: 3'- -CAGC---------UUCUaCCGUUGCUCgaa---CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 4088 | 0.66 | 0.811806 |
Target: 5'- -gCGAGGcagccGGCGGCGAugcaaagcaGCUcgGCCGCg -3' miRNA: 3'- caGCUUCua---CCGUUGCU---------CGAa-CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 2126 | 0.7 | 0.617158 |
Target: 5'- uGUCG-AGGUGGCcccuCGGGCguucGUCGCa -3' miRNA: 3'- -CAGCuUCUACCGuu--GCUCGaa--CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 38657 | 0.66 | 0.830731 |
Target: 5'- uUCGAAGAUcccguucaggacGGCGGCGaAGCccucGCCGg -3' miRNA: 3'- cAGCUUCUA------------CCGUUGC-UCGaa--CGGCg -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 42260 | 0.7 | 0.594585 |
Target: 5'- gGUCGAGGAUuGCGACGAuCUgGUCGUa -3' miRNA: 3'- -CAGCUUCUAcCGUUGCUcGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 42722 | 0.7 | 0.594585 |
Target: 5'- gGUCGGAGAUGG-AACGGGCaggaguucgUGaCGCg -3' miRNA: 3'- -CAGCUUCUACCgUUGCUCGa--------ACgGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 18690 | 0.7 | 0.605859 |
Target: 5'- aGUCcGGGGUGGUGACguaGAGCUUGCagguGCg -3' miRNA: 3'- -CAGcUUCUACCGUUG---CUCGAACGg---CG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 16979 | 0.7 | 0.605859 |
Target: 5'- -gUGAcGAUGGgAGCGAGCUgugUGCCcaGCg -3' miRNA: 3'- caGCUuCUACCgUUGCUCGA---ACGG--CG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 11838 | 0.7 | 0.605859 |
Target: 5'- --gGAAGGUcGGgAACGGGCUgucggUGCCGUu -3' miRNA: 3'- cagCUUCUA-CCgUUGCUCGA-----ACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 31884 | 0.69 | 0.68486 |
Target: 5'- aUCGucaaccGGcUGGCuGACcgGGGCUUGCCGCg -3' miRNA: 3'- cAGCu-----UCuACCG-UUG--CUCGAACGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 26544 | 0.68 | 0.739909 |
Target: 5'- aUCGAccucaGUGGUAcGCGGGCUcGCCGUa -3' miRNA: 3'- cAGCUuc---UACCGU-UGCUCGAaCGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 45329 | 0.67 | 0.750624 |
Target: 5'- cUCGAGGAguacaucaaGGCuACGGGUUcgucggGCCGCu -3' miRNA: 3'- cAGCUUCUa--------CCGuUGCUCGAa-----CGGCG- -5' |
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1377 | 5' | -52.6 | NC_001335.1 | + | 1413 | 0.66 | 0.80204 |
Target: 5'- -gCGucGAUGGCGAUuGGUUguauucGCCGCg -3' miRNA: 3'- caGCuuCUACCGUUGcUCGAa-----CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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