miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1383 5' -56 NC_001335.1 + 1809 0.76 0.189401
Target:  5'- aCGUauUCC-CCGGCCGu-CCUGGCGACg -3'
miRNA:   3'- aGCA--AGGuGGCUGGCuuGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 9019 0.76 0.193996
Target:  5'- gUCGUUCCcguuguGCCGcuuccgaACCGGACCCGGCu-- -3'
miRNA:   3'- -AGCAAGG------UGGC-------UGGCUUGGGCCGuug -5'
1383 5' -56 NC_001335.1 + 11661 0.74 0.246131
Target:  5'- gCGgaaaCCGuCCGugCGAACCCGGcCAACu -3'
miRNA:   3'- aGCaa--GGU-GGCugGCUUGGGCC-GUUG- -5'
1383 5' -56 NC_001335.1 + 38280 0.74 0.259044
Target:  5'- -aGUUCCGCuCGGCCGGccaGCCC-GCGACu -3'
miRNA:   3'- agCAAGGUG-GCUGGCU---UGGGcCGUUG- -5'
1383 5' -56 NC_001335.1 + 24414 0.73 0.301102
Target:  5'- -aGUUCCgGCCGACCGAuCuuGGCGu- -3'
miRNA:   3'- agCAAGG-UGGCUGGCUuGggCCGUug -5'
1383 5' -56 NC_001335.1 + 37868 0.73 0.316247
Target:  5'- gCGUcuucgCCACCGACCGGGCgaacuccauaCCGGCGu- -3'
miRNA:   3'- aGCAa----GGUGGCUGGCUUG----------GGCCGUug -5'
1383 5' -56 NC_001335.1 + 4071 0.71 0.391376
Target:  5'- -gGUUCacauGCCGACCGGcgaggcAgCCGGCGGCg -3'
miRNA:   3'- agCAAGg---UGGCUGGCU------UgGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 23916 0.66 0.647528
Target:  5'- gCGccUCCAgcuCCGA-CGAGCCCGGUGAUc -3'
miRNA:   3'- aGCa-AGGU---GGCUgGCUUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 1789 0.67 0.636615
Target:  5'- cUUGgugCCGCCGuacauGCCGAGgCCGGCu-- -3'
miRNA:   3'- -AGCaa-GGUGGC-----UGGCUUgGGCCGuug -5'
1383 5' -56 NC_001335.1 + 49103 0.67 0.608245
Target:  5'- -aGUUCCACgaggaccgcauCGACCGGcucgucacaacgcugGCCgaCGGCAACg -3'
miRNA:   3'- agCAAGGUG-----------GCUGGCU---------------UGG--GCCGUUG- -5'
1383 5' -56 NC_001335.1 + 40133 0.68 0.560623
Target:  5'- -aGgagUUCACCGGCCucGCCC-GCAACg -3'
miRNA:   3'- agCa--AGGUGGCUGGcuUGGGcCGUUG- -5'
1383 5' -56 NC_001335.1 + 7134 0.68 0.549929
Target:  5'- aCGgugaUCCACgCGGCUGAACgCGGCuuGCc -3'
miRNA:   3'- aGCa---AGGUG-GCUGGCUUGgGCCGu-UG- -5'
1383 5' -56 NC_001335.1 + 32457 0.69 0.518255
Target:  5'- ---aUCCACCGAggUCGAGaagCCGGUAACg -3'
miRNA:   3'- agcaAGGUGGCU--GGCUUg--GGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 32342 0.7 0.44752
Target:  5'- aUCGcgCCACCGAgaUCG-AUCCGGguGCg -3'
miRNA:   3'- -AGCaaGGUGGCU--GGCuUGGGCCguUG- -5'
1383 5' -56 NC_001335.1 + 13159 0.7 0.428302
Target:  5'- ----aCCGCCGACCGuGAUCUGGCggUg -3'
miRNA:   3'- agcaaGGUGGCUGGC-UUGGGCCGuuG- -5'
1383 5' -56 NC_001335.1 + 20620 0.77 0.156834
Target:  5'- aUCGcUCCACCGaccgcGCCGAGCgCGGCGAg -3'
miRNA:   3'- -AGCaAGGUGGC-----UGGCUUGgGCCGUUg -5'
1383 5' -56 NC_001335.1 + 32197 1.1 0.000792
Target:  5'- gUCGUUCCACCGACCGAACCCGGCAACu -3'
miRNA:   3'- -AGCAAGGUGGCUGGCUUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 2107 0.66 0.690942
Target:  5'- uUCG-UCCAgUuuaucggugaaGAUCGGGCUCGGCGGCu -3'
miRNA:   3'- -AGCaAGGUgG-----------CUGGCUUGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.