miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1383 5' -56 NC_001335.1 + 17710 0.69 0.487331
Target:  5'- aCGgccagUUCACCG-CCGAgggAUUCGGCAACg -3'
miRNA:   3'- aGCa----AGGUGGCuGGCU---UGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 9019 0.76 0.193996
Target:  5'- gUCGUUCCcguuguGCCGcuuccgaACCGGACCCGGCu-- -3'
miRNA:   3'- -AGCAAGG------UGGC-------UGGCUUGGGCCGuug -5'
1383 5' -56 NC_001335.1 + 11661 0.74 0.246131
Target:  5'- gCGgaaaCCGuCCGugCGAACCCGGcCAACu -3'
miRNA:   3'- aGCaa--GGU-GGCugGCUUGGGCC-GUUG- -5'
1383 5' -56 NC_001335.1 + 38280 0.74 0.259044
Target:  5'- -aGUUCCGCuCGGCCGGccaGCCC-GCGACu -3'
miRNA:   3'- agCAAGGUG-GCUGGCU---UGGGcCGUUG- -5'
1383 5' -56 NC_001335.1 + 24414 0.73 0.301102
Target:  5'- -aGUUCCgGCCGACCGAuCuuGGCGu- -3'
miRNA:   3'- agCAAGG-UGGCUGGCUuGggCCGUug -5'
1383 5' -56 NC_001335.1 + 37868 0.73 0.316247
Target:  5'- gCGUcuucgCCACCGACCGGGCgaacuccauaCCGGCGu- -3'
miRNA:   3'- aGCAa----GGUGGCUGGCUUG----------GGCCGUug -5'
1383 5' -56 NC_001335.1 + 4071 0.71 0.391376
Target:  5'- -gGUUCacauGCCGACCGGcgaggcAgCCGGCGGCg -3'
miRNA:   3'- agCAAGg---UGGCUGGCU------UgGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 51301 0.71 0.40958
Target:  5'- aUCGagcUUCCGCCGACCcucaguccUCUGGCAGCg -3'
miRNA:   3'- -AGC---AAGGUGGCUGGcuu-----GGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 5954 0.7 0.43785
Target:  5'- ----cCCAUCGGCaacuACCCGGCAGCg -3'
miRNA:   3'- agcaaGGUGGCUGgcu-UGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 1809 0.76 0.189401
Target:  5'- aCGUauUCC-CCGGCCGu-CCUGGCGACg -3'
miRNA:   3'- aGCA--AGGuGGCUGGCuuGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 51724 0.67 0.635523
Target:  5'- aCGUgccgcuaUCCGCUGgucacGCUGGAcaguCCCGGCAGCc -3'
miRNA:   3'- aGCA-------AGGUGGC-----UGGCUU----GGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 50838 0.67 0.614785
Target:  5'- gCGUUCaGCCaGGCCGAcagGCCgGGCGu- -3'
miRNA:   3'- aGCAAGgUGG-CUGGCU---UGGgCCGUug -5'
1383 5' -56 NC_001335.1 + 3201 0.68 0.528738
Target:  5'- ----aCCACaUGGCCGAcCUCGGCAACc -3'
miRNA:   3'- agcaaGGUG-GCUGGCUuGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 36841 0.66 0.647528
Target:  5'- cUUGgUCCACCGAgaCGGGCUCGGguAg -3'
miRNA:   3'- -AGCaAGGUGGCUg-GCUUGGGCCguUg -5'
1383 5' -56 NC_001335.1 + 49639 0.68 0.539298
Target:  5'- aCGUUCCugCGGCCGuugacgcacaGACC--GCAACg -3'
miRNA:   3'- aGCAAGGugGCUGGC----------UUGGgcCGUUG- -5'
1383 5' -56 NC_001335.1 + 1663 0.68 0.549929
Target:  5'- -gGUUCCcCCGAUCu-ACUCGGCAAUc -3'
miRNA:   3'- agCAAGGuGGCUGGcuUGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 48290 0.66 0.668218
Target:  5'- gUCGcggCCgGCCGGCCGAACCacacccuUGGCGu- -3'
miRNA:   3'- -AGCaa-GG-UGGCUGGCUUGG-------GCCGUug -5'
1383 5' -56 NC_001335.1 + 37617 0.66 0.701682
Target:  5'- cCGUgaCAUCGACugcgucgaaguCGAuCCCGGCAGCc -3'
miRNA:   3'- aGCAagGUGGCUG-----------GCUuGGGCCGUUG- -5'
1383 5' -56 NC_001335.1 + 1523 0.68 0.539298
Target:  5'- aUCG-UCCACCGcACCaAGCacuuCGGCGACc -3'
miRNA:   3'- -AGCaAGGUGGC-UGGcUUGg---GCCGUUG- -5'
1383 5' -56 NC_001335.1 + 48750 0.68 0.539298
Target:  5'- cUCGUaCCaAUCGACCucGAACCCguagcgGGCGGCg -3'
miRNA:   3'- -AGCAaGG-UGGCUGG--CUUGGG------CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.