Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1383 | 5' | -56 | NC_001335.1 | + | 1523 | 0.68 | 0.539298 |
Target: 5'- aUCG-UCCACCGcACCaAGCacuuCGGCGACc -3' miRNA: 3'- -AGCaAGGUGGC-UGGcUUGg---GCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 1663 | 0.68 | 0.549929 |
Target: 5'- -gGUUCCcCCGAUCu-ACUCGGCAAUc -3' miRNA: 3'- agCAAGGuGGCUGGcuUGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 1789 | 0.67 | 0.636615 |
Target: 5'- cUUGgugCCGCCGuacauGCCGAGgCCGGCu-- -3' miRNA: 3'- -AGCaa-GGUGGC-----UGGCUUgGGCCGuug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 1809 | 0.76 | 0.189401 |
Target: 5'- aCGUauUCC-CCGGCCGu-CCUGGCGACg -3' miRNA: 3'- aGCA--AGGuGGCUGGCuuGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 2107 | 0.66 | 0.690942 |
Target: 5'- uUCG-UCCAgUuuaucggugaaGAUCGGGCUCGGCGGCu -3' miRNA: 3'- -AGCaAGGUgG-----------CUGGCUUGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 3201 | 0.68 | 0.528738 |
Target: 5'- ----aCCACaUGGCCGAcCUCGGCAACc -3' miRNA: 3'- agcaaGGUG-GCUGGCUuGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 3305 | 0.66 | 0.680145 |
Target: 5'- cUGUUCC-UCGAacUCGAGaCCGGCGGCg -3' miRNA: 3'- aGCAAGGuGGCU--GGCUUgGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 4071 | 0.71 | 0.391376 |
Target: 5'- -gGUUCacauGCCGACCGGcgaggcAgCCGGCGGCg -3' miRNA: 3'- agCAAGg---UGGCUGGCU------UgGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 5954 | 0.7 | 0.43785 |
Target: 5'- ----cCCAUCGGCaacuACCCGGCAGCg -3' miRNA: 3'- agcaaGGUGGCUGgcu-UGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 7027 | 0.7 | 0.44752 |
Target: 5'- uUCGa--CGCCGACgGuAACCCGGuCGGCa -3' miRNA: 3'- -AGCaagGUGGCUGgC-UUGGGCC-GUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 7134 | 0.68 | 0.549929 |
Target: 5'- aCGgugaUCCACgCGGCUGAACgCGGCuuGCc -3' miRNA: 3'- aGCa---AGGUG-GCUGGCUUGgGCCGu-UG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 9019 | 0.76 | 0.193996 |
Target: 5'- gUCGUUCCcguuguGCCGcuuccgaACCGGACCCGGCu-- -3' miRNA: 3'- -AGCAAGG------UGGC-------UGGCUUGGGCCGuug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 11661 | 0.74 | 0.246131 |
Target: 5'- gCGgaaaCCGuCCGugCGAACCCGGcCAACu -3' miRNA: 3'- aGCaa--GGU-GGCugGCUUGGGCC-GUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 13159 | 0.7 | 0.428302 |
Target: 5'- ----aCCGCCGACCGuGAUCUGGCggUg -3' miRNA: 3'- agcaaGGUGGCUGGC-UUGGGCCGuuG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 16579 | 0.66 | 0.676897 |
Target: 5'- gCGUUCCugacgcuguccaacGCCGGCgCGAACUcguuCGGCAc- -3' miRNA: 3'- aGCAAGG--------------UGGCUG-GCUUGG----GCCGUug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 17710 | 0.69 | 0.487331 |
Target: 5'- aCGgccagUUCACCG-CCGAgggAUUCGGCAACg -3' miRNA: 3'- aGCa----AGGUGGCuGGCU---UGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 20620 | 0.77 | 0.156834 |
Target: 5'- aUCGcUCCACCGaccgcGCCGAGCgCGGCGAg -3' miRNA: 3'- -AGCaAGGUGGC-----UGGCUUGgGCCGUUg -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 23916 | 0.66 | 0.647528 |
Target: 5'- gCGccUCCAgcuCCGA-CGAGCCCGGUGAUc -3' miRNA: 3'- aGCa-AGGU---GGCUgGCUUGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 24414 | 0.73 | 0.301102 |
Target: 5'- -aGUUCCgGCCGACCGAuCuuGGCGu- -3' miRNA: 3'- agCAAGG-UGGCUGGCUuGggCCGUug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 25982 | 0.66 | 0.690942 |
Target: 5'- aUCcugUCCACCGucguAUCGGuggCCGGCAACg -3' miRNA: 3'- -AGca-AGGUGGC----UGGCUug-GGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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