Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1383 | 5' | -56 | NC_001335.1 | + | 51724 | 0.67 | 0.635523 |
Target: 5'- aCGUgccgcuaUCCGCUGgucacGCUGGAcaguCCCGGCAGCc -3' miRNA: 3'- aGCA-------AGGUGGC-----UGGCUU----GGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 51301 | 0.71 | 0.40958 |
Target: 5'- aUCGagcUUCCGCCGACCcucaguccUCUGGCAGCg -3' miRNA: 3'- -AGC---AAGGUGGCUGGcuu-----GGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 50838 | 0.67 | 0.614785 |
Target: 5'- gCGUUCaGCCaGGCCGAcagGCCgGGCGu- -3' miRNA: 3'- aGCAAGgUGG-CUGGCU---UGGgCCGUug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 50016 | 0.66 | 0.695245 |
Target: 5'- uUCGgagcCUugCGACggucgcaauccuugaCGAACUCGGCGACc -3' miRNA: 3'- -AGCaa--GGugGCUG---------------GCUUGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 49639 | 0.68 | 0.539298 |
Target: 5'- aCGUUCCugCGGCCGuugacgcacaGACC--GCAACg -3' miRNA: 3'- aGCAAGGugGCUGGC----------UUGGgcCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 49103 | 0.67 | 0.608245 |
Target: 5'- -aGUUCCACgaggaccgcauCGACCGGcucgucacaacgcugGCCgaCGGCAACg -3' miRNA: 3'- agCAAGGUG-----------GCUGGCU---------------UGG--GCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 48750 | 0.68 | 0.539298 |
Target: 5'- cUCGUaCCaAUCGACCucGAACCCguagcgGGCGGCg -3' miRNA: 3'- -AGCAaGG-UGGCUGG--CUUGGG------CCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 48290 | 0.66 | 0.668218 |
Target: 5'- gUCGcggCCgGCCGGCCGAACCacacccuUGGCGu- -3' miRNA: 3'- -AGCaa-GG-UGGCUGGCUUGG-------GCCGUug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 46415 | 0.66 | 0.690942 |
Target: 5'- ----cCCGCCGGCCGAuuCCaCGGCc-- -3' miRNA: 3'- agcaaGGUGGCUGGCUu-GG-GCCGuug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 40133 | 0.68 | 0.560623 |
Target: 5'- -aGgagUUCACCGGCCucGCCC-GCAACg -3' miRNA: 3'- agCa--AGGUGGCUGGcuUGGGcCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 39415 | 0.66 | 0.680145 |
Target: 5'- aUCGUcCuCACCGAagucgaacUCGAugCUGGCGAUc -3' miRNA: 3'- -AGCAaG-GUGGCU--------GGCUugGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 38280 | 0.74 | 0.259044 |
Target: 5'- -aGUUCCGCuCGGCCGGccaGCCC-GCGACu -3' miRNA: 3'- agCAAGGUG-GCUGGCU---UGGGcCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 37868 | 0.73 | 0.316247 |
Target: 5'- gCGUcuucgCCACCGACCGGGCgaacuccauaCCGGCGu- -3' miRNA: 3'- aGCAa----GGUGGCUGGCUUG----------GGCCGUug -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 37617 | 0.66 | 0.701682 |
Target: 5'- cCGUgaCAUCGACugcgucgaaguCGAuCCCGGCAGCc -3' miRNA: 3'- aGCAagGUGGCUG-----------GCUuGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 36841 | 0.66 | 0.647528 |
Target: 5'- cUUGgUCCACCGAgaCGGGCUCGGguAg -3' miRNA: 3'- -AGCaAGGUGGCUg-GCUUGGGCCguUg -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 32457 | 0.69 | 0.518255 |
Target: 5'- ---aUCCACCGAggUCGAGaagCCGGUAACg -3' miRNA: 3'- agcaAGGUGGCU--GGCUUg--GGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 32342 | 0.7 | 0.44752 |
Target: 5'- aUCGcgCCACCGAgaUCG-AUCCGGguGCg -3' miRNA: 3'- -AGCaaGGUGGCU--GGCuUGGGCCguUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 32197 | 1.1 | 0.000792 |
Target: 5'- gUCGUUCCACCGACCGAACCCGGCAACu -3' miRNA: 3'- -AGCAAGGUGGCUGGCUUGGGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 25982 | 0.66 | 0.690942 |
Target: 5'- aUCcugUCCACCGucguAUCGGuggCCGGCAACg -3' miRNA: 3'- -AGca-AGGUGGC----UGGCUug-GGCCGUUG- -5' |
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1383 | 5' | -56 | NC_001335.1 | + | 24414 | 0.73 | 0.301102 |
Target: 5'- -aGUUCCgGCCGACCGAuCuuGGCGu- -3' miRNA: 3'- agCAAGG-UGGCUGGCUuGggCCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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