miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1386 5' -55.1 NC_001335.1 + 33237 1.08 0.001021
Target:  5'- gUUCACCGCCAACGUCCAUCCAGACGCc -3'
miRNA:   3'- -AAGUGGCGGUUGCAGGUAGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 22655 0.78 0.142618
Target:  5'- -aCGCCGCCAGCGUUCugcugguuGUCCAgucGACGCu -3'
miRNA:   3'- aaGUGGCGGUUGCAGG--------UAGGU---CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 27180 0.78 0.146654
Target:  5'- -aCACCcCCAGCGUCCcgguguucAUCCAGAUGCc -3'
miRNA:   3'- aaGUGGcGGUUGCAGG--------UAGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 792 0.76 0.187907
Target:  5'- -gCGCCGCCuucggcAUGUUCGUCCAGAgGCu -3'
miRNA:   3'- aaGUGGCGGu-----UGCAGGUAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 29473 0.74 0.286447
Target:  5'- -cCGCUGCCAcACGUUCAUCaacccacugCAGGCGCg -3'
miRNA:   3'- aaGUGGCGGU-UGCAGGUAG---------GUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 22785 0.73 0.293795
Target:  5'- cUgGuuGCCuuCGUCCAUCCAGAC-Ca -3'
miRNA:   3'- aAgUggCGGuuGCAGGUAGGUCUGcG- -5'
1386 5' -55.1 NC_001335.1 + 22277 0.73 0.316718
Target:  5'- -aCACCGUCAACaacaCCAUCCAGAC-Ca -3'
miRNA:   3'- aaGUGGCGGUUGca--GGUAGGUCUGcG- -5'
1386 5' -55.1 NC_001335.1 + 46878 0.72 0.349337
Target:  5'- -cCACCGaccugcCCGACG-CCAUCCAGugGg -3'
miRNA:   3'- aaGUGGC------GGUUGCaGGUAGGUCugCg -5'
1386 5' -55.1 NC_001335.1 + 3813 0.71 0.410081
Target:  5'- -aCACCGUCAACGUCgAcuucuacuggaaCCGGACGUa -3'
miRNA:   3'- aaGUGGCGGUUGCAGgUa-----------GGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 15578 0.71 0.411965
Target:  5'- -aCAUCuaCGACG-CCAUCCAGGCGg -3'
miRNA:   3'- aaGUGGcgGUUGCaGGUAGGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 16876 0.71 0.421463
Target:  5'- cUgAUCGgCAACGUCC-UCgGGACGCu -3'
miRNA:   3'- aAgUGGCgGUUGCAGGuAGgUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 24983 0.7 0.431092
Target:  5'- --uGCCuaCAACGUCC-UCCGGGCGg -3'
miRNA:   3'- aagUGGcgGUUGCAGGuAGGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 1333 0.7 0.47085
Target:  5'- -cCGCCGCCGGC-UCCAcuUCCGccgccaccgguGACGCc -3'
miRNA:   3'- aaGUGGCGGUUGcAGGU--AGGU-----------CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 32551 0.69 0.512388
Target:  5'- -gUACCGCUucuCG-CCA-CCAGGCGCu -3'
miRNA:   3'- aaGUGGCGGuu-GCaGGUaGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 1229 0.69 0.533719
Target:  5'- -aCGCCGCCuACGccgCCcgAUCCGGGgGCu -3'
miRNA:   3'- aaGUGGCGGuUGCa--GG--UAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 30461 0.69 0.533719
Target:  5'- gUCACCGUCAACGUCguUgaaaccCCAGAgGa -3'
miRNA:   3'- aAGUGGCGGUUGCAGguA------GGUCUgCg -5'
1386 5' -55.1 NC_001335.1 + 9202 0.68 0.544504
Target:  5'- aUCGgCGUCGAC-UCCGagaccggCCAGACGCu -3'
miRNA:   3'- aAGUgGCGGUUGcAGGUa------GGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 25193 0.68 0.544504
Target:  5'- --aGCCGCCAGCG-CCAUC---ACGCu -3'
miRNA:   3'- aagUGGCGGUUGCaGGUAGgucUGCG- -5'
1386 5' -55.1 NC_001335.1 + 7252 0.68 0.555358
Target:  5'- --aACCGcCCGACGUucgUCGUCCagaacgAGACGCa -3'
miRNA:   3'- aagUGGC-GGUUGCA---GGUAGG------UCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 16924 0.68 0.555358
Target:  5'- gUCACggCGCUcACG-CCGgccuUCCAGACGCu -3'
miRNA:   3'- aAGUG--GCGGuUGCaGGU----AGGUCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.