miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1386 5' -55.1 NC_001335.1 + 262 0.68 0.603748
Target:  5'- -gCGCCGCacaGGCGgcgcgauaagagcgCCA-CCAGGCGCu -3'
miRNA:   3'- aaGUGGCGg--UUGCa-------------GGUaGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 792 0.76 0.187907
Target:  5'- -gCGCCGCCuucggcAUGUUCGUCCAGAgGCu -3'
miRNA:   3'- aaGUGGCGGu-----UGCAGGUAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 1229 0.69 0.533719
Target:  5'- -aCGCCGCCuACGccgCCcgAUCCGGGgGCu -3'
miRNA:   3'- aaGUGGCGGuUGCa--GG--UAGGUCUgCG- -5'
1386 5' -55.1 NC_001335.1 + 1333 0.7 0.47085
Target:  5'- -cCGCCGCCGGC-UCCAcuUCCGccgccaccgguGACGCc -3'
miRNA:   3'- aaGUGGCGGUUGcAGGU--AGGU-----------CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 2022 0.66 0.720595
Target:  5'- aUCugCGCCucGAUGaagCCGUCCAGGgugcCGUa -3'
miRNA:   3'- aAGugGCGG--UUGCa--GGUAGGUCU----GCG- -5'
1386 5' -55.1 NC_001335.1 + 2715 0.68 0.599317
Target:  5'- -aCACC-CCGGacaGUCCAaccgacacgaUCCAGAUGCc -3'
miRNA:   3'- aaGUGGcGGUUg--CAGGU----------AGGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 3739 0.68 0.588263
Target:  5'- gUUCGCgGUCGACGUgaCCAgCCAGGCa- -3'
miRNA:   3'- -AAGUGgCGGUUGCA--GGUaGGUCUGcg -5'
1386 5' -55.1 NC_001335.1 + 3813 0.71 0.410081
Target:  5'- -aCACCGUCAACGUCgAcuucuacuggaaCCGGACGUa -3'
miRNA:   3'- aaGUGGCGGUUGCAGgUa-----------GGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 4159 0.67 0.610401
Target:  5'- aUCGCCGCCGGCuGcCUcgCCGGuCGg -3'
miRNA:   3'- aAGUGGCGGUUG-CaGGuaGGUCuGCg -5'
1386 5' -55.1 NC_001335.1 + 7075 0.67 0.654827
Target:  5'- aUCACCGUC-GCGgccgucagCCAggaCCAGACGa -3'
miRNA:   3'- aAGUGGCGGuUGCa-------GGUa--GGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 7252 0.68 0.555358
Target:  5'- --aACCGcCCGACGUucgUCGUCCagaacgAGACGCa -3'
miRNA:   3'- aagUGGC-GGUUGCA---GGUAGG------UCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 7967 0.68 0.588263
Target:  5'- ----aCGCCAAgGUCCAUUCGGGuuCGCc -3'
miRNA:   3'- aagugGCGGUUgCAGGUAGGUCU--GCG- -5'
1386 5' -55.1 NC_001335.1 + 8741 0.66 0.675851
Target:  5'- gUUCACgGCCGGuCGUUCAUcacgaucagcaagCCAGAccCGCa -3'
miRNA:   3'- -AAGUGgCGGUU-GCAGGUA-------------GGUCU--GCG- -5'
1386 5' -55.1 NC_001335.1 + 9034 0.66 0.676954
Target:  5'- cUCACCGUCAGCGcggaaCCAgccgauggucUCCAucGGCGUg -3'
miRNA:   3'- aAGUGGCGGUUGCa----GGU----------AGGU--CUGCG- -5'
1386 5' -55.1 NC_001335.1 + 9173 0.67 0.609291
Target:  5'- -gCGCCGCC-GCGUCgGUCaucgaccgaagcuCGGGCGUg -3'
miRNA:   3'- aaGUGGCGGuUGCAGgUAG-------------GUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 9202 0.68 0.544504
Target:  5'- aUCGgCGUCGAC-UCCGagaccggCCAGACGCu -3'
miRNA:   3'- aAGUgGCGGUUGcAGGUa------GGUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 15578 0.71 0.411965
Target:  5'- -aCAUCuaCGACG-CCAUCCAGGCGg -3'
miRNA:   3'- aaGUGGcgGUUGCaGGUAGGUCUGCg -5'
1386 5' -55.1 NC_001335.1 + 16236 0.66 0.676954
Target:  5'- gUCGCUGCUgucuGCGUUCGgagCCGG-CGCu -3'
miRNA:   3'- aAGUGGCGGu---UGCAGGUa--GGUCuGCG- -5'
1386 5' -55.1 NC_001335.1 + 16876 0.71 0.421463
Target:  5'- cUgAUCGgCAACGUCC-UCgGGACGCu -3'
miRNA:   3'- aAgUGGCgGUUGCAGGuAGgUCUGCG- -5'
1386 5' -55.1 NC_001335.1 + 16924 0.68 0.555358
Target:  5'- gUCACggCGCUcACG-CCGgccuUCCAGACGCu -3'
miRNA:   3'- aAGUG--GCGGuUGCaGGU----AGGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.