miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1389 5' -60 NC_001335.1 + 1304 0.66 0.495458
Target:  5'- gGUGACGCCu-CCGGU---ACCGGCg -3'
miRNA:   3'- gCACUGCGGccGGCCGuucUGGCUGa -5'
1389 5' -60 NC_001335.1 + 17601 0.66 0.48552
Target:  5'- --cGAUgGCCaucaGGuuGGCGAGAgCCGACUg -3'
miRNA:   3'- gcaCUG-CGG----CCggCCGUUCU-GGCUGA- -5'
1389 5' -60 NC_001335.1 + 29080 0.66 0.475678
Target:  5'- gGUGugGagCGGCUGaGCAAGaaGCUGGCg -3'
miRNA:   3'- gCACugCg-GCCGGC-CGUUC--UGGCUGa -5'
1389 5' -60 NC_001335.1 + 627 0.66 0.465937
Target:  5'- gGUGACGCggcauauuccaGGCCGcGagauAGGCCGGCa -3'
miRNA:   3'- gCACUGCGg----------CCGGC-Cgu--UCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 22589 0.66 0.465937
Target:  5'- --aGaACGCUGG-CGGCGuGGCCGGCg -3'
miRNA:   3'- gcaC-UGCGGCCgGCCGUuCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 27028 0.66 0.460142
Target:  5'- aCGUGACGauGggucucguaggcgaaGCCGGCGAGAUCGcCa -3'
miRNA:   3'- -GCACUGCggC---------------CGGCCGUUCUGGCuGa -5'
1389 5' -60 NC_001335.1 + 41414 0.66 0.446772
Target:  5'- --cGGUGCCggGGCCGGCGcAGACCagGACUa -3'
miRNA:   3'- gcaCUGCGG--CCGGCCGU-UCUGG--CUGA- -5'
1389 5' -60 NC_001335.1 + 4077 0.66 0.446772
Target:  5'- ---cAUGCCGaCCGGCGAGgcaGCCGGCg -3'
miRNA:   3'- gcacUGCGGCcGGCCGUUC---UGGCUGa -5'
1389 5' -60 NC_001335.1 + 14488 0.66 0.446772
Target:  5'- gCGUG-CcUCGGCUGGUguGGCCGACg -3'
miRNA:   3'- -GCACuGcGGCCGGCCGuuCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 16291 0.67 0.437355
Target:  5'- --cGACGgcagaCCGGCCaGC-AGACCGGCc -3'
miRNA:   3'- gcaCUGC-----GGCCGGcCGuUCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 44954 0.67 0.418869
Target:  5'- --cGACGCCguGGCCgucucccacugGGCGugGGAUCGACUg -3'
miRNA:   3'- gcaCUGCGG--CCGG-----------CCGU--UCUGGCUGA- -5'
1389 5' -60 NC_001335.1 + 48318 0.67 0.400866
Target:  5'- -uUGGCGUgGGCCaGCAGGACgUGGCc -3'
miRNA:   3'- gcACUGCGgCCGGcCGUUCUG-GCUGa -5'
1389 5' -60 NC_001335.1 + 20606 0.67 0.400866
Target:  5'- ---cGCGCCGaGCgCGGCGAG-CUGGCUg -3'
miRNA:   3'- gcacUGCGGC-CG-GCCGUUCuGGCUGA- -5'
1389 5' -60 NC_001335.1 + 12677 0.67 0.391177
Target:  5'- aCGUGAaagcCGCUGcGUCGGCGacguuccGGGCCGAUc -3'
miRNA:   3'- -GCACU----GCGGC-CGGCCGU-------UCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 15922 0.68 0.374805
Target:  5'- --cGAUG-CGGCCcaGGcCAAGGCCGACUu -3'
miRNA:   3'- gcaCUGCgGCCGG--CC-GUUCUGGCUGA- -5'
1389 5' -60 NC_001335.1 + 31166 0.68 0.357257
Target:  5'- --aGGCGCUGGCUcaGGUcaagccuGAGACCGGCc -3'
miRNA:   3'- gcaCUGCGGCCGG--CCG-------UUCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 27141 0.69 0.331643
Target:  5'- cCGUGcCGCCcucacaggcggacaGGCucaggguggCGGCAAGGCCGAUg -3'
miRNA:   3'- -GCACuGCGG--------------CCG---------GCCGUUCUGGCUGa -5'
1389 5' -60 NC_001335.1 + 8599 0.69 0.326223
Target:  5'- gGUGACGCCGa-UGGCcucuGGCCGGCg -3'
miRNA:   3'- gCACUGCGGCcgGCCGuu--CUGGCUGa -5'
1389 5' -60 NC_001335.1 + 16935 0.69 0.326223
Target:  5'- ---cACGCCGGCCuuccagacgcuGGCGAGcacGCCGGCa -3'
miRNA:   3'- gcacUGCGGCCGG-----------CCGUUC---UGGCUGa -5'
1389 5' -60 NC_001335.1 + 16322 0.69 0.318595
Target:  5'- --cGACGCUGGagaCGGuCAAGGCCG-CUg -3'
miRNA:   3'- gcaCUGCGGCCg--GCC-GUUCUGGCuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.