miRNA display CGI


Results 61 - 80 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 11461 0.7 0.635854
Target:  5'- aGGCGCGACgGCucugaagacaggugcUGCCUCACCGGgaucaucCUcGGCu -3'
miRNA:   3'- -CUGCGUUG-CG---------------ACGGAGUGGCC-------GA-CCG- -5'
13934 3' -59.2 NC_003521.1 + 40613 0.7 0.636832
Target:  5'- uGCGCAGCGCcgugauccugGCCaaacuggcggcgcgCACCGaGCUGGCc -3'
miRNA:   3'- cUGCGUUGCGa---------CGGa-------------GUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 7663 0.7 0.642701
Target:  5'- aGAUGCcaGACGCUGaa--GCCGGCgGGCa -3'
miRNA:   3'- -CUGCG--UUGCGACggagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 153693 0.7 0.652474
Target:  5'- aGCGCGACcggcuGCUGCUgaccaCGCCGG-UGGCg -3'
miRNA:   3'- cUGCGUUG-----CGACGGa----GUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 116349 0.7 0.652474
Target:  5'- cGCGCGgacaGCGCUGCaCUCGCUGcGcCUGGa -3'
miRNA:   3'- cUGCGU----UGCGACG-GAGUGGC-C-GACCg -5'
13934 3' -59.2 NC_003521.1 + 103082 0.7 0.652474
Target:  5'- -uCGCAGCGCcgcuacuugcUGCCgC-CCGaGCUGGCg -3'
miRNA:   3'- cuGCGUUGCG----------ACGGaGuGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 168794 0.7 0.652474
Target:  5'- -cCGCcGCGCUgGCCgccaGCCuGCUGGCg -3'
miRNA:   3'- cuGCGuUGCGA-CGGag--UGGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 18762 0.7 0.652475
Target:  5'- cGACGgGuCGCUGCUgcgaCGGCUGGUg -3'
miRNA:   3'- -CUGCgUuGCGACGGagugGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 87622 0.7 0.652475
Target:  5'- uGugGCAGCaggugccgccGCagGCCUCGCacaGGCUGGa -3'
miRNA:   3'- -CugCGUUG----------CGa-CGGAGUGg--CCGACCg -5'
13934 3' -59.2 NC_003521.1 + 85944 0.7 0.662233
Target:  5'- -cUGCGGCGCgUGCUggaCGCCGGCucggaacagcUGGCg -3'
miRNA:   3'- cuGCGUUGCG-ACGGa--GUGGCCG----------ACCG- -5'
13934 3' -59.2 NC_003521.1 + 224799 0.7 0.662233
Target:  5'- gGGCGcCGugGgUGCCU-ACCGGCccGGCg -3'
miRNA:   3'- -CUGC-GUugCgACGGAgUGGCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 33373 0.7 0.662233
Target:  5'- --gGCc-CGCUacGCCgUCAUCGGCUGGCu -3'
miRNA:   3'- cugCGuuGCGA--CGG-AGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 86690 0.7 0.662234
Target:  5'- aGACGCuGGCGCUGCCgcccuugC-CCGGCcgcgagaugGGCc -3'
miRNA:   3'- -CUGCG-UUGCGACGGa------GuGGCCGa--------CCG- -5'
13934 3' -59.2 NC_003521.1 + 195764 0.7 0.662234
Target:  5'- gGACGC-GCGUUGCCUgGCaCGaGC-GGCg -3'
miRNA:   3'- -CUGCGuUGCGACGGAgUG-GC-CGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 6349 0.7 0.671971
Target:  5'- uGGCGgAACGCcGCCgCACCGGCcgucGCa -3'
miRNA:   3'- -CUGCgUUGCGaCGGaGUGGCCGac--CG- -5'
13934 3' -59.2 NC_003521.1 + 219380 0.7 0.671971
Target:  5'- uGCGCuacgGCGCUG-CUCAUgUGGCUGGUg -3'
miRNA:   3'- cUGCGu---UGCGACgGAGUG-GCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 117488 0.7 0.671971
Target:  5'- --gGCGACGg-GCCUguCCGGCggGGCg -3'
miRNA:   3'- cugCGUUGCgaCGGAguGGCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 19076 0.7 0.671971
Target:  5'- aGACGCuGACGCUGUCguuccgcuugaUCACCcagacGGCcGGCa -3'
miRNA:   3'- -CUGCG-UUGCGACGG-----------AGUGG-----CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 28250 0.7 0.675857
Target:  5'- -cCGCucACGCUGCCgccguggccgugagCGCCGcCUGGCg -3'
miRNA:   3'- cuGCGu-UGCGACGGa-------------GUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 145592 0.7 0.675858
Target:  5'- cGACGCGGCgGCcgugGCCUCGcugcugcagucgcacCCGGUgccgGGCg -3'
miRNA:   3'- -CUGCGUUG-CGa---CGGAGU---------------GGCCGa---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.