miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 123835 0.71 0.584136
Target:  5'- cACGCGGCGCUGCacgACUGcCUGGCg -3'
miRNA:   3'- cUGCGUUGCGACGgagUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 123398 0.71 0.584136
Target:  5'- cGACGCGcCGCUGCCguacuucguaCAgCGGCccGGCg -3'
miRNA:   3'- -CUGCGUuGCGACGGa---------GUgGCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 143553 0.71 0.584136
Target:  5'- cGACgaGCAGCaGCcGCCaUCGCUGGCgGGCa -3'
miRNA:   3'- -CUG--CGUUG-CGaCGG-AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 124140 0.71 0.584136
Target:  5'- -cCGCGcCGCUGCCUCcgccgccgcuGCCGuGCaGGCg -3'
miRNA:   3'- cuGCGUuGCGACGGAG----------UGGC-CGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 82982 0.71 0.593854
Target:  5'- -cCGCAACGCaGCCUCguuGCUGGacuUGGCc -3'
miRNA:   3'- cuGCGUUGCGaCGGAG---UGGCCg--ACCG- -5'
13934 3' -59.2 NC_003521.1 + 150680 0.71 0.593854
Target:  5'- cGGCGCcGCuGCUGCUgggugcugcugCGCCGGC-GGCg -3'
miRNA:   3'- -CUGCGuUG-CGACGGa----------GUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 136992 0.71 0.593854
Target:  5'- gGACGCGgaaggcggcGCGCUGCCagUCcUCGGC-GGCg -3'
miRNA:   3'- -CUGCGU---------UGCGACGG--AGuGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 131484 0.71 0.603597
Target:  5'- -uCGCGACGCUGUCUCuggcGCCGGCc--- -3'
miRNA:   3'- cuGCGUUGCGACGGAG----UGGCCGaccg -5'
13934 3' -59.2 NC_003521.1 + 125793 0.71 0.603597
Target:  5'- uGACGCAggaaGCGCUGCCgauccucagCACCacgacGCUGGg -3'
miRNA:   3'- -CUGCGU----UGCGACGGa--------GUGGc----CGACCg -5'
13934 3' -59.2 NC_003521.1 + 42644 0.71 0.603597
Target:  5'- uACGCcACGCgauugGCCg--UCGGCUGGCg -3'
miRNA:   3'- cUGCGuUGCGa----CGGaguGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 196705 0.71 0.603598
Target:  5'- --aGCAGCGacgGCCgacuUCACCGGC-GGCg -3'
miRNA:   3'- cugCGUUGCga-CGG----AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 35481 0.71 0.603598
Target:  5'- cGGCGCA--GCUGCCgcCGCCGaGgaGGCg -3'
miRNA:   3'- -CUGCGUugCGACGGa-GUGGC-CgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 202301 0.71 0.61336
Target:  5'- aGACGuCGugGCUGCaUUCGCCGGacccccggacCUGGUc -3'
miRNA:   3'- -CUGC-GUugCGACG-GAGUGGCC----------GACCG- -5'
13934 3' -59.2 NC_003521.1 + 239014 0.71 0.613361
Target:  5'- aGACGuCGugGCUGCaUUCGCCGGacccccggacCUGGUc -3'
miRNA:   3'- -CUGC-GUugCGACG-GAGUGGCC----------GACCG- -5'
13934 3' -59.2 NC_003521.1 + 62222 0.71 0.613361
Target:  5'- gGACGCcgUGCUGCaggagggCGcCCGGCUGGa -3'
miRNA:   3'- -CUGCGuuGCGACGga-----GU-GGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 215486 0.7 0.623137
Target:  5'- uGACGgGcuuCGCUaCCuUCACCGGgCUGGCg -3'
miRNA:   3'- -CUGCgUu--GCGAcGG-AGUGGCC-GACCG- -5'
13934 3' -59.2 NC_003521.1 + 152043 0.7 0.632919
Target:  5'- -cCGCAGCGgUGCUUCACCcGCaGGUc -3'
miRNA:   3'- cuGCGUUGCgACGGAGUGGcCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 128114 0.7 0.632919
Target:  5'- --gGCAAC-CUGCCcgACgGGCUGGCg -3'
miRNA:   3'- cugCGUUGcGACGGagUGgCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 205196 0.7 0.632919
Target:  5'- uACGCGAacgUGCUGCCUCucauucagagACUGGUgGGCg -3'
miRNA:   3'- cUGCGUU---GCGACGGAG----------UGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 56967 0.7 0.632919
Target:  5'- cGACGCGAccagcgucaucCGCUGCCUgGgCGGCUacuGCg -3'
miRNA:   3'- -CUGCGUU-----------GCGACGGAgUgGCCGAc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.