miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 203360 0.73 0.471484
Target:  5'- --gGCGGCGCUGCUUUAUaucgucugugCGGCUGGUc -3'
miRNA:   3'- cugCGUUGCGACGGAGUG----------GCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 179526 0.73 0.480489
Target:  5'- gGAgGUAACGCUGCUg-GCCGGCgaguucaGGCg -3'
miRNA:   3'- -CUgCGUUGCGACGGagUGGCCGa------CCG- -5'
13934 3' -59.2 NC_003521.1 + 100862 0.73 0.489578
Target:  5'- aGACGCuuCGCcGCCUCguccACCGGCcccuacGGCg -3'
miRNA:   3'- -CUGCGuuGCGaCGGAG----UGGCCGa-----CCG- -5'
13934 3' -59.2 NC_003521.1 + 56012 0.73 0.498745
Target:  5'- cGCGCcuguCGCUGCCgcccgcgCGCUGGgaGGCg -3'
miRNA:   3'- cUGCGuu--GCGACGGa------GUGGCCgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 152816 0.73 0.502434
Target:  5'- cGCGUGACGCUGCCgUACCugagcagcgugcuggGGCUGaGCg -3'
miRNA:   3'- cUGCGUUGCGACGGaGUGG---------------CCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 152348 0.72 0.507989
Target:  5'- cGCGcCGACGCUGCuCUgggGCCGGCcggGGCg -3'
miRNA:   3'- cUGC-GUUGCGACG-GAg--UGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 50596 0.72 0.514502
Target:  5'- aGCGCAAacgggccgaggaccCGCUGCCUCcCUGGCUGaggaGCg -3'
miRNA:   3'- cUGCGUU--------------GCGACGGAGuGGCCGAC----CG- -5'
13934 3' -59.2 NC_003521.1 + 130560 0.72 0.517304
Target:  5'- uGCGCGGCGCcgcgGCCUCgcccagguaGCCGGagagGGCg -3'
miRNA:   3'- cUGCGUUGCGa---CGGAG---------UGGCCga--CCG- -5'
13934 3' -59.2 NC_003521.1 + 112366 0.72 0.517304
Target:  5'- cACGCGGCgGCUGCggcguCUCGuccacCUGGCUGGCg -3'
miRNA:   3'- cUGCGUUG-CGACG-----GAGU-----GGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 143926 0.72 0.517304
Target:  5'- cGGCGCGcCGCauccccaacUGCUcgCACCGGCUGcGCg -3'
miRNA:   3'- -CUGCGUuGCG---------ACGGa-GUGGCCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 53450 0.72 0.517304
Target:  5'- cGCGCGcCGCUgGCCaucuUCAUCGGCgagGGCg -3'
miRNA:   3'- cUGCGUuGCGA-CGG----AGUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 33536 0.72 0.526686
Target:  5'- -uCGCAGCuGCUGCaCgaucgCGCCGGCcugcUGGCg -3'
miRNA:   3'- cuGCGUUG-CGACG-Ga----GUGGCCG----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 195878 0.72 0.526686
Target:  5'- aACGCGACcaGCUGgCggGCCGGCUGcGCa -3'
miRNA:   3'- cUGCGUUG--CGACgGagUGGCCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 222373 0.72 0.536132
Target:  5'- cGGCGCAgcgccucgagACGCUGCCggCGCUgcagGGCgGGCu -3'
miRNA:   3'- -CUGCGU----------UGCGACGGa-GUGG----CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 239764 0.72 0.543731
Target:  5'- cGACGUGGCGCgGCUguaucgguccaACCGGCUGGg -3'
miRNA:   3'- -CUGCGUUGCGaCGGag---------UGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 201552 0.72 0.543731
Target:  5'- cGACGUGGCGCgGCUguaucgguccaACCGGCUGGg -3'
miRNA:   3'- -CUGCGUUGCGaCGGag---------UGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 143178 0.72 0.545637
Target:  5'- -cUGCAACGCcGaCgUCGCCGGCUgauGGCg -3'
miRNA:   3'- cuGCGUUGCGaC-GgAGUGGCCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 193090 0.72 0.555194
Target:  5'- gGACGCGcCGCcggGCUUCugCGGCUGcuGCc -3'
miRNA:   3'- -CUGCGUuGCGa--CGGAGugGCCGAC--CG- -5'
13934 3' -59.2 NC_003521.1 + 103841 0.71 0.564801
Target:  5'- aGGgGCcGCGUcucgGCCUCGuCCaGGCUGGCg -3'
miRNA:   3'- -CUgCGuUGCGa---CGGAGU-GG-CCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 65036 0.71 0.574449
Target:  5'- aGGCGCuugggauCGCccggUGCCgCGCCGGCcGGCg -3'
miRNA:   3'- -CUGCGuu-----GCG----ACGGaGUGGCCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.