miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 32185 0.68 0.783376
Target:  5'- aGCGCGaggucaucgcGCGCUGCCUgcCGCaguuccugugccgCGGcCUGGCg -3'
miRNA:   3'- cUGCGU----------UGCGACGGA--GUG-------------GCC-GACCG- -5'
13934 3' -59.2 NC_003521.1 + 33373 0.7 0.662233
Target:  5'- --gGCc-CGCUacGCCgUCAUCGGCUGGCu -3'
miRNA:   3'- cugCGuuGCGA--CGG-AGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 33536 0.72 0.526686
Target:  5'- -uCGCAGCuGCUGCaCgaucgCGCCGGCcugcUGGCg -3'
miRNA:   3'- cuGCGUUG-CGACG-Ga----GUGGCCG----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 34946 0.66 0.85002
Target:  5'- cGACGCGcaggAgGaCUGCCUCuaCGaGCUGGCc -3'
miRNA:   3'- -CUGCGU----UgC-GACGGAGugGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 35166 0.68 0.738865
Target:  5'- uGCGCuucgagGGCGCcugcGUCUCGCUGGgCUGGCc -3'
miRNA:   3'- cUGCG------UUGCGa---CGGAGUGGCC-GACCG- -5'
13934 3' -59.2 NC_003521.1 + 35481 0.71 0.603598
Target:  5'- cGGCGCA--GCUGCCgcCGCCGaGgaGGCg -3'
miRNA:   3'- -CUGCGUugCGACGGa-GUGGC-CgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 36771 0.66 0.857496
Target:  5'- gGACGC-GCGUgGCCUgGCgGGCgUGGa -3'
miRNA:   3'- -CUGCGuUGCGaCGGAgUGgCCG-ACCg -5'
13934 3' -59.2 NC_003521.1 + 37360 0.69 0.681679
Target:  5'- cGACGgAGCGCUGCUUC-UUGG-UGGCc -3'
miRNA:   3'- -CUGCgUUGCGACGGAGuGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 39714 0.67 0.809218
Target:  5'- cGACGCGgcccucgGCGCcgGgCUCgGCCGGCagcGGCa -3'
miRNA:   3'- -CUGCGU-------UGCGa-CgGAG-UGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 40115 0.66 0.871884
Target:  5'- cGACGC-ACGUUGaugaUCACgCGGCcGGUg -3'
miRNA:   3'- -CUGCGuUGCGACgg--AGUG-GCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 40613 0.7 0.636832
Target:  5'- uGCGCAGCGCcgugauccugGCCaaacuggcggcgcgCACCGaGCUGGCc -3'
miRNA:   3'- cUGCGUUGCGa---------CGGa-------------GUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 42557 0.66 0.864785
Target:  5'- cGACGCccgGCUGgCUguCCGGC-GGCc -3'
miRNA:   3'- -CUGCGuugCGACgGAguGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 42644 0.71 0.603597
Target:  5'- uACGCcACGCgauugGCCg--UCGGCUGGCg -3'
miRNA:   3'- cUGCGuUGCGa----CGGaguGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 49841 0.68 0.757333
Target:  5'- gGAgGCGGCGCcgcgGCC-CACgCGGCaGGUg -3'
miRNA:   3'- -CUgCGUUGCGa---CGGaGUG-GCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 50596 0.72 0.514502
Target:  5'- aGCGCAAacgggccgaggaccCGCUGCCUCcCUGGCUGaggaGCg -3'
miRNA:   3'- cUGCGUU--------------GCGACGGAGuGGCCGAC----CG- -5'
13934 3' -59.2 NC_003521.1 + 52302 0.66 0.876049
Target:  5'- --gGCGACGUgggGCC-CGCCGGCcuccucguaucucGGCg -3'
miRNA:   3'- cugCGUUGCGa--CGGaGUGGCCGa------------CCG- -5'
13934 3' -59.2 NC_003521.1 + 53199 0.66 0.878786
Target:  5'- --aGCGGCGCgcgGCCcggcUCGCCcuGGCaGGCc -3'
miRNA:   3'- cugCGUUGCGa--CGG----AGUGG--CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 53380 0.68 0.783377
Target:  5'- uGACGCGGCGCaccaGCUUCugCaGCUccuugcgGGCg -3'
miRNA:   3'- -CUGCGUUGCGa---CGGAGugGcCGA-------CCG- -5'
13934 3' -59.2 NC_003521.1 + 53450 0.72 0.517304
Target:  5'- cGCGCGcCGCUgGCCaucuUCAUCGGCgagGGCg -3'
miRNA:   3'- cUGCGUuGCGA-CGG----AGUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 53620 0.75 0.378706
Target:  5'- aGCGgGACGgUGCUgcaCAUCGGCUGGCc -3'
miRNA:   3'- cUGCgUUGCgACGGa--GUGGCCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.