miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 197034 0.66 0.85002
Target:  5'- cGCGCc-CGCgGUCgCGCCGGCcggGGCa -3'
miRNA:   3'- cUGCGuuGCGaCGGaGUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 233738 0.66 0.878786
Target:  5'- gGACGCcgccgccGCGuCUGCuucuuCUCACCGGg-GGCa -3'
miRNA:   3'- -CUGCGu------UGC-GACG-----GAGUGGCCgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 123914 0.66 0.85002
Target:  5'- cGCGCGGCGCUGuUCUCcACCaGUUGcaGCg -3'
miRNA:   3'- cUGCGUUGCGAC-GGAG-UGGcCGAC--CG- -5'
13934 3' -59.2 NC_003521.1 + 36771 0.66 0.857496
Target:  5'- gGACGC-GCGUgGCCUgGCgGGCgUGGa -3'
miRNA:   3'- -CUGCGuUGCGaCGGAgUGgCCG-ACCg -5'
13934 3' -59.2 NC_003521.1 + 151312 0.66 0.85002
Target:  5'- cGCGCAAgGCgGCCagGCgGG-UGGCg -3'
miRNA:   3'- cUGCGUUgCGaCGGagUGgCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 52302 0.66 0.876049
Target:  5'- --gGCGACGUgggGCC-CGCCGGCcuccucguaucucGGCg -3'
miRNA:   3'- cugCGUUGCGa--CGGaGUGGCCGa------------CCG- -5'
13934 3' -59.2 NC_003521.1 + 130070 0.66 0.857496
Target:  5'- -cCGCGGC-CUGCuCUCGCUGGCcgagUGGa -3'
miRNA:   3'- cuGCGUUGcGACG-GAGUGGCCG----ACCg -5'
13934 3' -59.2 NC_003521.1 + 141840 0.66 0.871884
Target:  5'- -cUGCGACGC-GCCUa--CGGCUcccGGCa -3'
miRNA:   3'- cuGCGUUGCGaCGGAgugGCCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 180010 0.66 0.846979
Target:  5'- cGugGCAuccucgucgaaauCGUUGUC-CAgCGGCUGGUa -3'
miRNA:   3'- -CugCGUu------------GCGACGGaGUgGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 201671 0.66 0.85002
Target:  5'- -cCGCGA-GCUGCgC-CGCCGG-UGGCa -3'
miRNA:   3'- cuGCGUUgCGACG-GaGUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 124179 0.66 0.871884
Target:  5'- aGCGCcugUGC-GCCU-GCCGGCUGGg -3'
miRNA:   3'- cUGCGuu-GCGaCGGAgUGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 101152 0.66 0.853032
Target:  5'- aGCGCGGCGCggucugcgucccucuCCUCAgacggcguccgcgcCCGGCgGGCg -3'
miRNA:   3'- cUGCGUUGCGac-------------GGAGU--------------GGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 53199 0.66 0.878786
Target:  5'- --aGCGGCGCgcgGCCcggcUCGCCcuGGCaGGCc -3'
miRNA:   3'- cugCGUUGCGa--CGG----AGUGG--CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 88535 0.66 0.849262
Target:  5'- aGGCGCAcCGaaacgGCCUCcucggggcagggcACCaGCUGGCc -3'
miRNA:   3'- -CUGCGUuGCga---CGGAG-------------UGGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 232770 0.66 0.871884
Target:  5'- uACGgucuGCGCUGcCCUCAgCaGCUGGUu -3'
miRNA:   3'- cUGCgu--UGCGAC-GGAGUgGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 30233 0.66 0.871884
Target:  5'- uGGCGUcGCGCUGCaggucCGCgCGGUugccgUGGCg -3'
miRNA:   3'- -CUGCGuUGCGACGga---GUG-GCCG-----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 12545 0.66 0.878786
Target:  5'- aGACGUGuuucaaCCUCACCGuGCUGGCc -3'
miRNA:   3'- -CUGCGUugcgacGGAGUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 64297 0.66 0.878786
Target:  5'- -cCGCAGCGC-GgCUCACagacgacGCUGGCc -3'
miRNA:   3'- cuGCGUUGCGaCgGAGUGgc-----CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 74143 0.66 0.842364
Target:  5'- cGACGUGGCGCgccacgggGCCcaggUGCCG-CUGGCc -3'
miRNA:   3'- -CUGCGUUGCGa-------CGGa---GUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 54905 0.66 0.864785
Target:  5'- uGCGCAcCGuUUGCaggaucagCGCCGGCgugGGCa -3'
miRNA:   3'- cUGCGUuGC-GACGga------GUGGCCGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.