miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 123914 0.66 0.85002
Target:  5'- cGCGCGGCGCUGuUCUCcACCaGUUGcaGCg -3'
miRNA:   3'- cUGCGUUGCGAC-GGAG-UGGcCGAC--CG- -5'
13934 3' -59.2 NC_003521.1 + 151312 0.66 0.85002
Target:  5'- cGCGCAAgGCgGCCagGCgGG-UGGCg -3'
miRNA:   3'- cUGCGUUgCGaCGGagUGgCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 238487 0.66 0.878785
Target:  5'- cGACGCucGACGCcgUGCCgaCGCCcaGGCUcuuGGCc -3'
miRNA:   3'- -CUGCG--UUGCG--ACGGa-GUGG--CCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 120582 0.66 0.842364
Target:  5'- cGAUGCAcgGCGCgGCC--GCCGGCUccugccGGUa -3'
miRNA:   3'- -CUGCGU--UGCGaCGGagUGGCCGA------CCG- -5'
13934 3' -59.2 NC_003521.1 + 36771 0.66 0.857496
Target:  5'- gGACGC-GCGUgGCCUgGCgGGCgUGGa -3'
miRNA:   3'- -CUGCGuUGCGaCGGAgUGgCCG-ACCg -5'
13934 3' -59.2 NC_003521.1 + 165794 0.66 0.85002
Target:  5'- -cCGCuGGCGCUGCCgUCGCaguaGGggucCUGGCc -3'
miRNA:   3'- cuGCG-UUGCGACGG-AGUGg---CC----GACCG- -5'
13934 3' -59.2 NC_003521.1 + 131336 0.66 0.864785
Target:  5'- -gUGCAGCGCuucgccccgUGCCgucgcaagcUCAUCGGC-GGCa -3'
miRNA:   3'- cuGCGUUGCG---------ACGG---------AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 180010 0.66 0.846979
Target:  5'- cGugGCAuccucgucgaaauCGUUGUC-CAgCGGCUGGUa -3'
miRNA:   3'- -CugCGUu------------GCGACGGaGUgGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 88535 0.66 0.849262
Target:  5'- aGGCGCAcCGaaacgGCCUCcucggggcagggcACCaGCUGGCc -3'
miRNA:   3'- -CUGCGUuGCga---CGGAG-------------UGGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 74143 0.66 0.842364
Target:  5'- cGACGUGGCGCgccacgggGCCcaggUGCCG-CUGGCc -3'
miRNA:   3'- -CUGCGUUGCGa-------CGGa---GUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 70524 0.66 0.864785
Target:  5'- cGACGUGAC-C-GCCUCGCgcuCGGCcGGCc -3'
miRNA:   3'- -CUGCGUUGcGaCGGAGUG---GCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 201671 0.66 0.85002
Target:  5'- -cCGCGA-GCUGCgC-CGCCGG-UGGCa -3'
miRNA:   3'- cuGCGUUgCGACG-GaGUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 55018 0.66 0.842364
Target:  5'- aGGCGCAGCGCcaGCgUCGgCGGCUc-- -3'
miRNA:   3'- -CUGCGUUGCGa-CGgAGUgGCCGAccg -5'
13934 3' -59.2 NC_003521.1 + 54905 0.66 0.864785
Target:  5'- uGCGCAcCGuUUGCaggaucagCGCCGGCgugGGCa -3'
miRNA:   3'- cUGCGUuGC-GACGga------GUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 42557 0.66 0.864785
Target:  5'- cGACGCccgGCUGgCUguCCGGC-GGCc -3'
miRNA:   3'- -CUGCGuugCGACgGAguGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 130070 0.66 0.857496
Target:  5'- -cCGCGGC-CUGCuCUCGCUGGCcgagUGGa -3'
miRNA:   3'- cuGCGUUGcGACG-GAGUGGCCG----ACCg -5'
13934 3' -59.2 NC_003521.1 + 101152 0.66 0.853032
Target:  5'- aGCGCGGCGCggucugcgucccucuCCUCAgacggcguccgcgcCCGGCgGGCg -3'
miRNA:   3'- cUGCGUUGCGac-------------GGAGU--------------GGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 239367 0.66 0.864785
Target:  5'- gGAUGCccgugUGCUGCC--ACCGGC-GGCg -3'
miRNA:   3'- -CUGCGuu---GCGACGGagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 129902 0.66 0.864785
Target:  5'- cGACGaCGGgGCgGCCgcgCGCCuGCUGcGCg -3'
miRNA:   3'- -CUGC-GUUgCGaCGGa--GUGGcCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 103326 0.66 0.842364
Target:  5'- aGGCGCuGACGC-GCCagCGCCGuGCgguaGGCc -3'
miRNA:   3'- -CUGCG-UUGCGaCGGa-GUGGC-CGa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.