miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 62222 0.71 0.613361
Target:  5'- gGACGCcgUGCUGCaggagggCGcCCGGCUGGa -3'
miRNA:   3'- -CUGCGuuGCGACGga-----GU-GGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 201552 0.72 0.543731
Target:  5'- cGACGUGGCGCgGCUguaucgguccaACCGGCUGGg -3'
miRNA:   3'- -CUGCGUUGCGaCGGag---------UGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 103841 0.71 0.564801
Target:  5'- aGGgGCcGCGUcucgGCCUCGuCCaGGCUGGCg -3'
miRNA:   3'- -CUgCGuUGCGa---CGGAGU-GG-CCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 124140 0.71 0.584136
Target:  5'- -cCGCGcCGCUGCCUCcgccgccgcuGCCGuGCaGGCg -3'
miRNA:   3'- cuGCGUuGCGACGGAG----------UGGC-CGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 143553 0.71 0.584136
Target:  5'- cGACgaGCAGCaGCcGCCaUCGCUGGCgGGCa -3'
miRNA:   3'- -CUG--CGUUG-CGaCGG-AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 150680 0.71 0.593854
Target:  5'- cGGCGCcGCuGCUGCUgggugcugcugCGCCGGC-GGCg -3'
miRNA:   3'- -CUGCGuUG-CGACGGa----------GUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 196705 0.71 0.603598
Target:  5'- --aGCAGCGacgGCCgacuUCACCGGC-GGCg -3'
miRNA:   3'- cugCGUUGCga-CGG----AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 35481 0.71 0.603598
Target:  5'- cGGCGCA--GCUGCCgcCGCCGaGgaGGCg -3'
miRNA:   3'- -CUGCGUugCGACGGa-GUGGC-CgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 239014 0.71 0.613361
Target:  5'- aGACGuCGugGCUGCaUUCGCCGGacccccggacCUGGUc -3'
miRNA:   3'- -CUGC-GUugCGACG-GAGUGGCC----------GACCG- -5'
13934 3' -59.2 NC_003521.1 + 143926 0.72 0.517304
Target:  5'- cGGCGCGcCGCauccccaacUGCUcgCACCGGCUGcGCg -3'
miRNA:   3'- -CUGCGUuGCG---------ACGGa-GUGGCCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 112366 0.72 0.517304
Target:  5'- cACGCGGCgGCUGCggcguCUCGuccacCUGGCUGGCg -3'
miRNA:   3'- cUGCGUUG-CGACG-----GAGU-----GGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 152348 0.72 0.507989
Target:  5'- cGCGcCGACGCUGCuCUgggGCCGGCcggGGCg -3'
miRNA:   3'- cUGC-GUUGCGACG-GAg--UGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 224809 0.82 0.151498
Target:  5'- cGCGCGugGCguaggGCgUCugCGGCUGGCg -3'
miRNA:   3'- cUGCGUugCGa----CGgAGugGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 150971 0.78 0.267293
Target:  5'- cGACGCGGCGCUggcgGCCgaCAUCGGCUacGGCg -3'
miRNA:   3'- -CUGCGUUGCGA----CGGa-GUGGCCGA--CCG- -5'
13934 3' -59.2 NC_003521.1 + 209737 0.77 0.312466
Target:  5'- uGCGCAGCggcagccacgGCaGCCggagUACCGGCUGGCa -3'
miRNA:   3'- cUGCGUUG----------CGaCGGa---GUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 2710 0.76 0.319373
Target:  5'- aACGCcacucgugcgggAGCGCcgucaccGCCUCGCUGGCUGGCu -3'
miRNA:   3'- cUGCG------------UUGCGa------CGGAGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 138667 0.76 0.348138
Target:  5'- aGACGgGGCGgUgaGCCUCACCGGCgacaaGGCc -3'
miRNA:   3'- -CUGCgUUGCgA--CGGAGUGGCCGa----CCG- -5'
13934 3' -59.2 NC_003521.1 + 238452 0.75 0.363199
Target:  5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3'
miRNA:   3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 129981 0.75 0.378706
Target:  5'- -gUGCAccguCGCUGCCgcugCGCCGGCggcGGCg -3'
miRNA:   3'- cuGCGUu---GCGACGGa---GUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 150038 0.73 0.462566
Target:  5'- uGCGCGACGCcacGCUgCACCGGgUGGUc -3'
miRNA:   3'- cUGCGUUGCGa--CGGaGUGGCCgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.