miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 719 1.1 0.001834
Target:  5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3'
miRNA:   3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 130560 0.72 0.517304
Target:  5'- uGCGCGGCGCcgcgGCCUCgcccagguaGCCGGagagGGCg -3'
miRNA:   3'- cUGCGUUGCGa---CGGAG---------UGGCCga--CCG- -5'
13934 3' -59.2 NC_003521.1 + 33536 0.72 0.526686
Target:  5'- -uCGCAGCuGCUGCaCgaucgCGCCGGCcugcUGGCg -3'
miRNA:   3'- cuGCGUUG-CGACG-Ga----GUGGCCG----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 238487 0.66 0.878785
Target:  5'- cGACGCucGACGCcgUGCCgaCGCCcaGGCUcuuGGCc -3'
miRNA:   3'- -CUGCG--UUGCG--ACGGa-GUGG--CCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 153022 0.75 0.361673
Target:  5'- cGACGCcguuccgcGCGCUGCCcguggaggacaACCGGCUGGUg -3'
miRNA:   3'- -CUGCGu-------UGCGACGGag---------UGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 202864 0.75 0.363199
Target:  5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3'
miRNA:   3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 53620 0.75 0.378706
Target:  5'- aGCGgGACGgUGCUgcaCAUCGGCUGGCc -3'
miRNA:   3'- cUGCgUUGCgACGGa--GUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 77297 0.75 0.386625
Target:  5'- -cUGCAACGCcuucuacgGCUUCACCGGCgUGGUc -3'
miRNA:   3'- cuGCGUUGCGa-------CGGAGUGGCCG-ACCG- -5'
13934 3' -59.2 NC_003521.1 + 203360 0.73 0.471484
Target:  5'- --gGCGGCGCUGCUUUAUaucgucugugCGGCUGGUc -3'
miRNA:   3'- cugCGUUGCGACGGAGUG----------GCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 50596 0.72 0.514502
Target:  5'- aGCGCAAacgggccgaggaccCGCUGCCUCcCUGGCUGaggaGCg -3'
miRNA:   3'- cUGCGUU--------------GCGACGGAGuGGCCGAC----CG- -5'
13934 3' -59.2 NC_003521.1 + 100862 0.73 0.489578
Target:  5'- aGACGCuuCGCcGCCUCguccACCGGCcccuacGGCg -3'
miRNA:   3'- -CUGCGuuGCGaCGGAG----UGGCCGa-----CCG- -5'
13934 3' -59.2 NC_003521.1 + 192308 0.74 0.436357
Target:  5'- gGACGCcGCGuCUGCCgcgcaCGCCGGC-GGUg -3'
miRNA:   3'- -CUGCGuUGC-GACGGa----GUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 224679 0.82 0.147832
Target:  5'- cACGCAGCGCcugGCCggcgaggugUACCGGCUGGCc -3'
miRNA:   3'- cUGCGUUGCGa--CGGa--------GUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 56012 0.73 0.498745
Target:  5'- cGCGCcuguCGCUGCCgcccgcgCGCUGGgaGGCg -3'
miRNA:   3'- cUGCGuu--GCGACGGa------GUGGCCgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 168491 0.77 0.277756
Target:  5'- aGGCGCucaagagcGCGCUGCUcaagcugcacaacaUCACCGuGCUGGCg -3'
miRNA:   3'- -CUGCGu-------UGCGACGG--------------AGUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 143810 0.74 0.427812
Target:  5'- --gGCGGCuGCUGCUcgUCGCCGGC-GGCg -3'
miRNA:   3'- cugCGUUG-CGACGG--AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 152816 0.73 0.502434
Target:  5'- cGCGUGACGCUGCCgUACCugagcagcgugcuggGGCUGaGCg -3'
miRNA:   3'- cUGCGUUGCGACGGaGUGG---------------CCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 53450 0.72 0.517304
Target:  5'- cGCGCGcCGCUgGCCaucuUCAUCGGCgagGGCg -3'
miRNA:   3'- cUGCGUuGCGA-CGG----AGUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 226991 0.76 0.347397
Target:  5'- aGCGCAacgagggACGCUGCCUgugucugggucCGCCgaagGGCUGGCa -3'
miRNA:   3'- cUGCGU-------UGCGACGGA-----------GUGG----CCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 70127 0.75 0.378706
Target:  5'- uGGCGCuGCGCggcgGCCUCAUCGGCa-GCg -3'
miRNA:   3'- -CUGCGuUGCGa---CGGAGUGGCCGacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.