Results 61 - 80 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 55736 | 0.71 | 0.541813 |
Target: 5'- aGcGCCUC-CCAGCGCGCGgGCgGCAGc -3' miRNA: 3'- aC-CGGAGcGGUCGUGUGU-CGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 122678 | 0.71 | 0.551464 |
Target: 5'- aGGCg-C-CCAGCACcgACAGCUGCGGg -3' miRNA: 3'- aCCGgaGcGGUCGUG--UGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 133374 | 0.7 | 0.600384 |
Target: 5'- cGGUC-CGCCGGCACAgcGCgGCGGUc -3' miRNA: 3'- aCCGGaGCGGUCGUGUguCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 196048 | 0.7 | 0.600384 |
Target: 5'- cGGCCUaggGCCAGCAC-CGGCcgccuuccGCGGUc -3' miRNA: 3'- aCCGGAg--CGGUCGUGuGUCGa-------CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 206 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 118269 | 0.7 | 0.600384 |
Target: 5'- cGGUa--GCCGGCAC-CAGCgGCGGUa -3' miRNA: 3'- aCCGgagCGGUCGUGuGUCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 240755 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 59619 | 0.7 | 0.610259 |
Target: 5'- cGGCCcCGgCGGCGacCGCGGCUcGCAGg -3' miRNA: 3'- aCCGGaGCgGUCGU--GUGUCGA-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 74612 | 0.7 | 0.610259 |
Target: 5'- cGcGCCUCGCCGccGCGCcaACAGCgggGUGGUg -3' miRNA: 3'- aC-CGGAGCGGU--CGUG--UGUCGa--CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 226164 | 0.69 | 0.617181 |
Target: 5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3' miRNA: 3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 56072 | 0.7 | 0.600384 |
Target: 5'- cGGCCUCcgucaCCAGCucGCGCAGCacgcGCAGa -3' miRNA: 3'- aCCGGAGc----GGUCG--UGUGUCGa---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 154875 | 0.7 | 0.590531 |
Target: 5'- cGGCCUCauGCU-GCGCuACAuGCUGCAGg -3' miRNA: 3'- aCCGGAG--CGGuCGUG-UGU-CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 36431 | 0.71 | 0.551464 |
Target: 5'- aGGCCUCGUacGUGCAgGGCUGCAu- -3' miRNA: 3'- aCCGGAGCGguCGUGUgUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 219202 | 0.71 | 0.551464 |
Target: 5'- aGGCCcaugauggcggUCGCCAGgcaGCAgAGUUGCAGg -3' miRNA: 3'- aCCGG-----------AGCGGUCg--UGUgUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 192127 | 0.71 | 0.551464 |
Target: 5'- cGGCCUCGUCGGCucCGuCGGCguccGCGGa -3' miRNA: 3'- aCCGGAGCGGUCGu-GU-GUCGa---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 223467 | 0.7 | 0.559223 |
Target: 5'- gGGCCgccgCGCCGGCGuCACGGCccgggaggugggGCGGa -3' miRNA: 3'- aCCGGa---GCGGUCGU-GUGUCGa-----------CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 197445 | 0.7 | 0.561167 |
Target: 5'- aUGGCCaggcggCGCCAGCGCAU-GCUcugGCGGa -3' miRNA: 3'- -ACCGGa-----GCGGUCGUGUGuCGA---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 70139 | 0.7 | 0.561167 |
Target: 5'- gGGCCUCGagcugCGGCgaGCGCGGCUGCc-- -3' miRNA: 3'- aCCGGAGCg----GUCG--UGUGUCGACGuca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 113983 | 0.7 | 0.561167 |
Target: 5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3' miRNA: 3'- aCCGGagCGG-UCGUGuGUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 168520 | 0.7 | 0.579726 |
Target: 5'- cGGCgaCGCCAGCaggcuggcggccaGCGCGGCgGCGGc -3' miRNA: 3'- aCCGgaGCGGUCG-------------UGUGUCGaCGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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