Results 41 - 60 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 121211 | 0.74 | 0.389775 |
Target: 5'- cGGUCUCGCgCagGGCGCGCAGCUcCAGg -3' miRNA: 3'- aCCGGAGCG-G--UCGUGUGUCGAcGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 153561 | 0.74 | 0.358225 |
Target: 5'- uUGGCCacgCGCaCGGCGCACAGCcgcuccaccaccUGCAGc -3' miRNA: 3'- -ACCGGa--GCG-GUCGUGUGUCG------------ACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 234668 | 0.75 | 0.321369 |
Target: 5'- gGaGCCggaGCCGGCGCAuUGGCUGCAGUa -3' miRNA: 3'- aC-CGGag-CGGUCGUGU-GUCGACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 168196 | 0.75 | 0.314347 |
Target: 5'- cUGGCC-CGCCAGCACggugauguuguGCAGCUugaGCAGc -3' miRNA: 3'- -ACCGGaGCGGUCGUG-----------UGUCGA---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 195616 | 0.76 | 0.29398 |
Target: 5'- cGGCC-CGCCAGCugguCGCGuuGCUGCAGc -3' miRNA: 3'- aCCGGaGCGGUCGu---GUGU--CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 148783 | 0.71 | 0.503823 |
Target: 5'- cGGUCgCGCCgaggAGC-CGCGGCUGCGGa -3' miRNA: 3'- aCCGGaGCGG----UCGuGUGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 30967 | 0.71 | 0.513218 |
Target: 5'- aGGCgCUCGgCAcGCAgcaGCAGCUGCGGa -3' miRNA: 3'- aCCG-GAGCgGU-CGUg--UGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 168520 | 0.7 | 0.579726 |
Target: 5'- cGGCgaCGCCAGCaggcuggcggccaGCGCGGCgGCGGc -3' miRNA: 3'- aCCGgaGCGGUCG-------------UGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 113983 | 0.7 | 0.561167 |
Target: 5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3' miRNA: 3'- aCCGGagCGG-UCGUGuGUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 70139 | 0.7 | 0.561167 |
Target: 5'- gGGCCUCGagcugCGGCgaGCGCGGCUGCc-- -3' miRNA: 3'- aCCGGAGCg----GUCG--UGUGUCGACGuca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 197445 | 0.7 | 0.561167 |
Target: 5'- aUGGCCaggcggCGCCAGCGCAU-GCUcugGCGGa -3' miRNA: 3'- -ACCGGa-----GCGGUCGUGUGuCGA---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 223467 | 0.7 | 0.559223 |
Target: 5'- gGGCCgccgCGCCGGCGuCACGGCccgggaggugggGCGGa -3' miRNA: 3'- aCCGGa---GCGGUCGU-GUGUCGa-----------CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 192127 | 0.71 | 0.551464 |
Target: 5'- cGGCCUCGUCGGCucCGuCGGCguccGCGGa -3' miRNA: 3'- aCCGGAGCGGUCGu-GU-GUCGa---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 219202 | 0.71 | 0.551464 |
Target: 5'- aGGCCcaugauggcggUCGCCAGgcaGCAgAGUUGCAGg -3' miRNA: 3'- aCCGG-----------AGCGGUCg--UGUgUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 36431 | 0.71 | 0.551464 |
Target: 5'- aGGCCUCGUacGUGCAgGGCUGCAu- -3' miRNA: 3'- aCCGGAGCGguCGUGUgUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 122678 | 0.71 | 0.551464 |
Target: 5'- aGGCg-C-CCAGCACcgACAGCUGCGGg -3' miRNA: 3'- aCCGgaGcGGUCGUG--UGUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 55736 | 0.71 | 0.541813 |
Target: 5'- aGcGCCUC-CCAGCGCGCGgGCgGCAGc -3' miRNA: 3'- aC-CGGAGcGGUCGUGUGU-CGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 119158 | 0.71 | 0.532218 |
Target: 5'- cGGcCCUCcgaggaaacagGCCGGCGCGCAGCUGgAu- -3' miRNA: 3'- aCC-GGAG-----------CGGUCGUGUGUCGACgUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 102487 | 0.71 | 0.532218 |
Target: 5'- aGGCCcgagaCGCCGuCGCGCAGCcGCAGg -3' miRNA: 3'- aCCGGa----GCGGUcGUGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 149485 | 0.71 | 0.522684 |
Target: 5'- cGGCUUCGCCGGacagACGCcGCUGCGc- -3' miRNA: 3'- aCCGGAGCGGUCg---UGUGuCGACGUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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