miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 63347 0.66 0.817934
Target:  5'- gGGCagcgCGCCGGC--GCAGCUGUAc- -3'
miRNA:   3'- aCCGga--GCGGUCGugUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 115415 0.66 0.792217
Target:  5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3'
miRNA:   3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 84816 0.66 0.800935
Target:  5'- gGGCCgcUCGCUgaaCAaGCGGCUGCAGg -3'
miRNA:   3'- aCCGG--AGCGGuc-GUgUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 25774 0.66 0.817934
Target:  5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3'
miRNA:   3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 70213 0.66 0.80951
Target:  5'- cGGCCcucgaagCGCuUGGCGCGCAGCagggcuagGCAGg -3'
miRNA:   3'- aCCGGa------GCG-GUCGUGUGUCGa-------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 124454 0.66 0.792217
Target:  5'- gGGCCgCGgCGGCACGCGuucgccgccgcGCUcGCGGUc -3'
miRNA:   3'- aCCGGaGCgGUCGUGUGU-----------CGA-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 29129 0.66 0.817934
Target:  5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3'
miRNA:   3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 100125 0.66 0.800935
Target:  5'- gUGGCC--GCCAuGCGC-CAGCUGCu-- -3'
miRNA:   3'- -ACCGGagCGGU-CGUGuGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 47938 0.66 0.806097
Target:  5'- -uGCCgugUCGUCGGCGCACAGCaucucaggagccgGCGGg -3'
miRNA:   3'- acCGG---AGCGGUCGUGUGUCGa------------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 31812 0.66 0.817098
Target:  5'- gGGCUUCGCCGaguggucGCAgAC-GCUGguGg -3'
miRNA:   3'- aCCGGAGCGGU-------CGUgUGuCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 88130 0.66 0.817934
Target:  5'- cGGCCUgGCCAGCGC-CuGCga-GGa -3'
miRNA:   3'- aCCGGAgCGGUCGUGuGuCGacgUCa -5'
13934 5' -59.7 NC_003521.1 + 126701 0.66 0.80951
Target:  5'- aGaUCUCGCCGGUGuCGCugguGCUGCAGa -3'
miRNA:   3'- aCcGGAGCGGUCGU-GUGu---CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 32333 0.66 0.792217
Target:  5'- gUGGCCacggGCCAGUACGUGGuCUGUAGUc -3'
miRNA:   3'- -ACCGGag--CGGUCGUGUGUC-GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 151570 0.67 0.783365
Target:  5'- -cGCCUgGCCGccuuGCGCGCgucggaacccaGGCUGCGGg -3'
miRNA:   3'- acCGGAgCGGU----CGUGUG-----------UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 155690 0.67 0.783365
Target:  5'- gGGUCg-GCCAGCucGCACAGCUccugGUAGg -3'
miRNA:   3'- aCCGGagCGGUCG--UGUGUCGA----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 88793 0.67 0.783365
Target:  5'- aGGCCguuucggugCGCCu--GCACGGCUGCgAGUc -3'
miRNA:   3'- aCCGGa--------GCGGucgUGUGUCGACG-UCA- -5'
13934 5' -59.7 NC_003521.1 + 68053 0.67 0.774385
Target:  5'- -cGCgCUCGCCGGUGgGCAGCUG-GGUc -3'
miRNA:   3'- acCG-GAGCGGUCGUgUGUCGACgUCA- -5'
13934 5' -59.7 NC_003521.1 + 45076 0.67 0.774385
Target:  5'- cGGCCUCGUgCAGCugcgugaGCAuCUGCAGc -3'
miRNA:   3'- aCCGGAGCG-GUCGug-----UGUcGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 55507 0.67 0.782472
Target:  5'- cGGgCUCGCCGGCGagccgcuCGgGGCUGUAu- -3'
miRNA:   3'- aCCgGAGCGGUCGU-------GUgUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 142918 0.67 0.783365
Target:  5'- cGGCgaCGUCGGCGuugcaGCAGCgGCGGUc -3'
miRNA:   3'- aCCGgaGCGGUCGUg----UGUCGaCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.