miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 63419 0.69 0.649841
Target:  5'- cGGCgcgucgaUCGUCAGCccGCGCAGCUGCu-- -3'
miRNA:   3'- aCCGg------AGCGGUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 64750 0.66 0.80951
Target:  5'- gUGGCCaagaCGCCGGCcgGCGCGGCaccggGCGa- -3'
miRNA:   3'- -ACCGGa---GCGGUCG--UGUGUCGa----CGUca -5'
13934 5' -59.7 NC_003521.1 + 65781 0.68 0.679415
Target:  5'- cGGCgUCGcCCAGCugACAGC-GCu-- -3'
miRNA:   3'- aCCGgAGC-GGUCGugUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 68053 0.67 0.774385
Target:  5'- -cGCgCUCGCCGGUGgGCAGCUG-GGUc -3'
miRNA:   3'- acCG-GAGCGGUCGUgUGUCGACgUCA- -5'
13934 5' -59.7 NC_003521.1 + 70139 0.7 0.561167
Target:  5'- gGGCCUCGagcugCGGCgaGCGCGGCUGCc-- -3'
miRNA:   3'- aCCGGAGCg----GUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 70213 0.66 0.80951
Target:  5'- cGGCCcucgaagCGCuUGGCGCGCAGCagggcuagGCAGg -3'
miRNA:   3'- aCCGGa------GCG-GUCGUGUGUCGa-------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 70717 0.67 0.783365
Target:  5'- gGcGCCUgCGCCggauguaccGGCACuucgucCAGCUGCAGc -3'
miRNA:   3'- aC-CGGA-GCGG---------UCGUGu-----GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 70930 0.67 0.737358
Target:  5'- cGGUUUU-CCAGCA-GCAGCUGCAGc -3'
miRNA:   3'- aCCGGAGcGGUCGUgUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 71776 0.66 0.800935
Target:  5'- cGGCCggCGUCGGU-CGCAGCgucGCGGc -3'
miRNA:   3'- aCCGGa-GCGGUCGuGUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 73614 0.67 0.765286
Target:  5'- gGGCCgUGCgCGGCGCGUAGUUGCAc- -3'
miRNA:   3'- aCCGGaGCG-GUCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 74174 0.66 0.817934
Target:  5'- cUGGCCgacugCGCCgcGGCGCcCGGCgcGCGGc -3'
miRNA:   3'- -ACCGGa----GCGG--UCGUGuGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 74366 0.68 0.718298
Target:  5'- gGGCgUCGCgCAGuCGCGCAGCaUGuCGGc -3'
miRNA:   3'- aCCGgAGCG-GUC-GUGUGUCG-AC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 74449 0.7 0.610258
Target:  5'- gGGCCgcgCGCCgGGCGcCGCGGC-GCAGc -3'
miRNA:   3'- aCCGGa--GCGG-UCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 74541 0.66 0.80951
Target:  5'- cGGaUgUUGCCGGCGCACuGCggaucGCAGa -3'
miRNA:   3'- aCC-GgAGCGGUCGUGUGuCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 74612 0.7 0.610259
Target:  5'- cGcGCCUCGCCGccGCGCcaACAGCgggGUGGUg -3'
miRNA:   3'- aC-CGGAGCGGU--CGUG--UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 75590 0.67 0.746765
Target:  5'- gGGCCgcCGUCAGCaucugggugACGCAGUcGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUCG---------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 75987 0.66 0.792217
Target:  5'- cGGcCCUCGCCgGGCGCcguCAGCacGUAGa -3'
miRNA:   3'- aCC-GGAGCGG-UCGUGu--GUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 76143 0.69 0.620149
Target:  5'- aGGuCCUCGaCGcGCACACGGC-GCAGg -3'
miRNA:   3'- aCC-GGAGCgGU-CGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 83467 0.66 0.795721
Target:  5'- cUGGCCcaCGuCCAGCAUuucGCgguccugcccguagcGGCUGCGGUa -3'
miRNA:   3'- -ACCGGa-GC-GGUCGUG---UG---------------UCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 84670 0.72 0.449165
Target:  5'- aGGCgUCGCagCAGCGCcaGCAGCUGCGu- -3'
miRNA:   3'- aCCGgAGCG--GUCGUG--UGUCGACGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.