miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 43240 0.7 0.570916
Target:  5'- aGGUCgucggugggCGCCGGCgggucgcgcucGCugGGCUGCAGg -3'
miRNA:   3'- aCCGGa--------GCGGUCG-----------UGugUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 164690 0.7 0.570916
Target:  5'- gUGGCgCU-GCUAGCAC-CAGCgGCGGUg -3'
miRNA:   3'- -ACCG-GAgCGGUCGUGuGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 168520 0.7 0.579726
Target:  5'- cGGCgaCGCCAGCaggcuggcggccaGCGCGGCgGCGGc -3'
miRNA:   3'- aCCGgaGCGGUCG-------------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 154875 0.7 0.590531
Target:  5'- cGGCCUCauGCU-GCGCuACAuGCUGCAGg -3'
miRNA:   3'- aCCGGAG--CGGuCGUG-UGU-CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 127027 0.7 0.600383
Target:  5'- gGGCCU-GCCGGacuuCACGucGCUGCAGUu -3'
miRNA:   3'- aCCGGAgCGGUCgu--GUGU--CGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 200560 0.7 0.600383
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 221205 0.7 0.600383
Target:  5'- cGGCCgCGUCGGCGCugAuccuGCUGCuGUu -3'
miRNA:   3'- aCCGGaGCGGUCGUGugU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 56072 0.7 0.600384
Target:  5'- cGGCCUCcgucaCCAGCucGCGCAGCacgcGCAGa -3'
miRNA:   3'- aCCGGAGc----GGUCG--UGUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 133374 0.7 0.600384
Target:  5'- cGGUC-CGCCGGCACAgcGCgGCGGUc -3'
miRNA:   3'- aCCGGaGCGGUCGUGUguCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 196048 0.7 0.600384
Target:  5'- cGGCCUaggGCCAGCAC-CGGCcgccuuccGCGGUc -3'
miRNA:   3'- aCCGGAg--CGGUCGUGuGUCGa-------CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 206 0.7 0.600384
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 118269 0.7 0.600384
Target:  5'- cGGUa--GCCGGCAC-CAGCgGCGGUa -3'
miRNA:   3'- aCCGgagCGGUCGUGuGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 240755 0.7 0.600384
Target:  5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3'
miRNA:   3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 85663 0.7 0.610258
Target:  5'- aGGCCUgcUGCCGGCcaaGCGCAGCcGCuuGUg -3'
miRNA:   3'- aCCGGA--GCGGUCG---UGUGUCGaCGu-CA- -5'
13934 5' -59.7 NC_003521.1 + 74449 0.7 0.610258
Target:  5'- gGGCCgcgCGCCgGGCGcCGCGGC-GCAGc -3'
miRNA:   3'- aCCGGa--GCGG-UCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 74612 0.7 0.610259
Target:  5'- cGcGCCUCGCCGccGCGCcaACAGCgggGUGGUg -3'
miRNA:   3'- aC-CGGAGCGGU--CGUG--UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 59619 0.7 0.610259
Target:  5'- cGGCCcCGgCGGCGacCGCGGCUcGCAGg -3'
miRNA:   3'- aCCGGaGCgGUCGU--GUGUCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 226164 0.69 0.617181
Target:  5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3'
miRNA:   3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 76143 0.69 0.620149
Target:  5'- aGGuCCUCGaCGcGCACACGGC-GCAGg -3'
miRNA:   3'- aCC-GGAGCgGU-CGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 101519 0.69 0.630047
Target:  5'- cGGCCga-CCAGCAgGC-GCUGCAGc -3'
miRNA:   3'- aCCGGagcGGUCGUgUGuCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.