miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 172333 0.66 0.80007
Target:  5'- aGGCCUCgGCCguccuguGGCACACGuCggGCGGg -3'
miRNA:   3'- aCCGGAG-CGG-------UCGUGUGUcGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 23809 0.66 0.800069
Target:  5'- cGGCCUCGCUgaAGCuGCAUgucaccgugaugaGGCUGCu-- -3'
miRNA:   3'- aCCGGAGCGG--UCG-UGUG-------------UCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 109387 0.66 0.797465
Target:  5'- aGGCCaggucgcggaaggCGCUcagGGUGCGCGGCUGCAu- -3'
miRNA:   3'- aCCGGa------------GCGG---UCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 83467 0.66 0.795721
Target:  5'- cUGGCCcaCGuCCAGCAUuucGCgguccugcccguagcGGCUGCGGUa -3'
miRNA:   3'- -ACCGGa-GC-GGUCGUG---UG---------------UCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 32333 0.66 0.792217
Target:  5'- gUGGCCacggGCCAGUACGUGGuCUGUAGUc -3'
miRNA:   3'- -ACCGGag--CGGUCGUGUGUC-GACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 234372 0.66 0.792217
Target:  5'- gGGUCUCGCCguGGUGCAgGGCcugacGCAGc -3'
miRNA:   3'- aCCGGAGCGG--UCGUGUgUCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 31978 0.66 0.792217
Target:  5'- cGGCgUC-CCAGCACGCGcacauGCUGCc-- -3'
miRNA:   3'- aCCGgAGcGGUCGUGUGU-----CGACGuca -5'
13934 5' -59.7 NC_003521.1 + 124454 0.66 0.792217
Target:  5'- gGGCCgCGgCGGCACGCGuucgccgccgcGCUcGCGGUc -3'
miRNA:   3'- aCCGGaGCgGUCGUGUGU-----------CGA-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 115415 0.66 0.792217
Target:  5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3'
miRNA:   3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 136861 0.66 0.792217
Target:  5'- gGGCCUgCGCUgucccgacaAGCGCAUcucgGGCUcGCAGa -3'
miRNA:   3'- aCCGGA-GCGG---------UCGUGUG----UCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 138027 0.66 0.792217
Target:  5'- cGuGCgUCgcuGCCGGCGCACggGGCUGUGGg -3'
miRNA:   3'- aC-CGgAG---CGGUCGUGUG--UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 75987 0.66 0.792217
Target:  5'- cGGcCCUCGCCgGGCGCcguCAGCacGUAGa -3'
miRNA:   3'- aCC-GGAGCGG-UCGUGu--GUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 147724 0.66 0.789575
Target:  5'- cGGCCUgucgCGCCAuccgcuacuuccgcGCGCGCAGcCUGUucaAGUa -3'
miRNA:   3'- aCCGGA----GCGGU--------------CGUGUGUC-GACG---UCA- -5'
13934 5' -59.7 NC_003521.1 + 155690 0.67 0.783365
Target:  5'- gGGUCg-GCCAGCucGCACAGCUccugGUAGg -3'
miRNA:   3'- aCCGGagCGGUCG--UGUGUCGA----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 142918 0.67 0.783365
Target:  5'- cGGCgaCGUCGGCGuugcaGCAGCgGCGGUc -3'
miRNA:   3'- aCCGgaGCGGUCGUg----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 88793 0.67 0.783365
Target:  5'- aGGCCguuucggugCGCCu--GCACGGCUGCgAGUc -3'
miRNA:   3'- aCCGGa--------GCGGucgUGUGUCGACG-UCA- -5'
13934 5' -59.7 NC_003521.1 + 70717 0.67 0.783365
Target:  5'- gGcGCCUgCGCCggauguaccGGCACuucgucCAGCUGCAGc -3'
miRNA:   3'- aC-CGGA-GCGG---------UCGUGu-----GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 85678 0.67 0.783365
Target:  5'- cGaGCCggCGuCCAGCACGC-GCcGCAGg -3'
miRNA:   3'- aC-CGGa-GC-GGUCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 151570 0.67 0.783365
Target:  5'- -cGCCUgGCCGccuuGCGCGCgucggaacccaGGCUGCGGg -3'
miRNA:   3'- acCGGAgCGGU----CGUGUG-----------UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 55507 0.67 0.782472
Target:  5'- cGGgCUCGCCGGCGagccgcuCGgGGCUGUAu- -3'
miRNA:   3'- aCCgGAGCGGUCGU-------GUgUCGACGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.