miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 55507 0.67 0.782472
Target:  5'- cGGgCUCGCCGGCGagccgcuCGgGGCUGUAu- -3'
miRNA:   3'- aCCgGAGCGGUCGU-------GUgUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 137271 0.67 0.774385
Target:  5'- gGGCCUCgGCCAGCuCGC-GCUGa--- -3'
miRNA:   3'- aCCGGAG-CGGUCGuGUGuCGACguca -5'
13934 5' -59.7 NC_003521.1 + 154636 0.67 0.774385
Target:  5'- cGGCUUCGUCAGCaaGCACGuGCcGCuGg -3'
miRNA:   3'- aCCGGAGCGGUCG--UGUGU-CGaCGuCa -5'
13934 5' -59.7 NC_003521.1 + 68053 0.67 0.774385
Target:  5'- -cGCgCUCGCCGGUGgGCAGCUG-GGUc -3'
miRNA:   3'- acCG-GAGCGGUCGUgUGUCGACgUCA- -5'
13934 5' -59.7 NC_003521.1 + 104061 0.67 0.774385
Target:  5'- cGGUcauCUCGCCGGaGCACGGCgGCGa- -3'
miRNA:   3'- aCCG---GAGCGGUCgUGUGUCGaCGUca -5'
13934 5' -59.7 NC_003521.1 + 45076 0.67 0.774385
Target:  5'- cGGCCUCGUgCAGCugcgugaGCAuCUGCAGc -3'
miRNA:   3'- aCCGGAGCG-GUCGug-----UGUcGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 209216 0.67 0.774385
Target:  5'- gUGGCCcUGCCAGCugACc-CUGCcgAGUa -3'
miRNA:   3'- -ACCGGaGCGGUCGugUGucGACG--UCA- -5'
13934 5' -59.7 NC_003521.1 + 88329 0.67 0.774385
Target:  5'- gGGUCUCGCCgaAGCGCAgcgacugacccCAGgaGguGUa -3'
miRNA:   3'- aCCGGAGCGG--UCGUGU-----------GUCgaCguCA- -5'
13934 5' -59.7 NC_003521.1 + 40834 0.67 0.765286
Target:  5'- gGGCCcgCGCCAuGgACACcuuGCUGCAc- -3'
miRNA:   3'- aCCGGa-GCGGU-CgUGUGu--CGACGUca -5'
13934 5' -59.7 NC_003521.1 + 142651 0.67 0.765286
Target:  5'- cGGCCUCagcgGUCGGCGCagcgccgucaGCAGCgacgGCGGc -3'
miRNA:   3'- aCCGGAG----CGGUCGUG----------UGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 187508 0.67 0.765286
Target:  5'- -cGUgUCGCCGGCACcCAuGCUGguGg -3'
miRNA:   3'- acCGgAGCGGUCGUGuGU-CGACguCa -5'
13934 5' -59.7 NC_003521.1 + 73614 0.67 0.765286
Target:  5'- gGGCCgUGCgCGGCGCGUAGUUGCAc- -3'
miRNA:   3'- aCCGGaGCG-GUCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 149049 0.67 0.765286
Target:  5'- aGGCCgUGCCcGCGCugGGCUucgacGCGGc -3'
miRNA:   3'- aCCGGaGCGGuCGUGugUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 135220 0.67 0.765286
Target:  5'- gGGCCUCGUC--CAC-CAGCaGCAGg -3'
miRNA:   3'- aCCGGAGCGGucGUGuGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 221898 0.67 0.756077
Target:  5'- gGGCggaUUGCCGGCGCGCGGC-GCc-- -3'
miRNA:   3'- aCCGg--AGCGGUCGUGUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 208616 0.67 0.756077
Target:  5'- cGGCCauaGCCAGuCAcCGCGGUgagGCAGa -3'
miRNA:   3'- aCCGGag-CGGUC-GU-GUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 86001 0.67 0.756077
Target:  5'- aUGGCCaaguUCG-CGGCGCuGCAGgaGCAGg -3'
miRNA:   3'- -ACCGG----AGCgGUCGUG-UGUCgaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 75590 0.67 0.746765
Target:  5'- gGGCCgcCGUCAGCaucugggugACGCAGUcGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUCG---------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 164835 0.67 0.746765
Target:  5'- -uGUCUCGCCAGCAC-CGGUgGCGa- -3'
miRNA:   3'- acCGGAGCGGUCGUGuGUCGaCGUca -5'
13934 5' -59.7 NC_003521.1 + 26540 0.67 0.746765
Target:  5'- cUGGCCUCGagaCCGGUGcCugGGgUGCAGc -3'
miRNA:   3'- -ACCGGAGC---GGUCGU-GugUCgACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.