miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 33680 0.66 0.817934
Target:  5'- cGGCCgUgGCCcGCACGUAacGCUGCAGc -3'
miRNA:   3'- aCCGG-AgCGGuCGUGUGU--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 74174 0.66 0.817934
Target:  5'- cUGGCCgacugCGCCgcGGCGCcCGGCgcGCGGc -3'
miRNA:   3'- -ACCGGa----GCGG--UCGUGuGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 63347 0.66 0.817934
Target:  5'- gGGCagcgCGCCGGC--GCAGCUGUAc- -3'
miRNA:   3'- aCCGga--GCGGUCGugUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 25774 0.66 0.817934
Target:  5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3'
miRNA:   3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 29129 0.66 0.817934
Target:  5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3'
miRNA:   3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 33242 0.66 0.817934
Target:  5'- cGGCgUUgaGCUGGCACACGcGCaGCAGg -3'
miRNA:   3'- aCCGgAG--CGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 31812 0.66 0.817098
Target:  5'- gGGCUUCGCCGaguggucGCAgAC-GCUGguGg -3'
miRNA:   3'- aCCGGAGCGGU-------CGUgUGuCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 5797 0.66 0.816261
Target:  5'- cGGCCgCGCCGGCugccgucaccguCGCuGCUGCu-- -3'
miRNA:   3'- aCCGGaGCGGUCGu-----------GUGuCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 74541 0.66 0.80951
Target:  5'- cGGaUgUUGCCGGCGCACuGCggaucGCAGa -3'
miRNA:   3'- aCC-GgAGCGGUCGUGUGuCGa----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 70213 0.66 0.80951
Target:  5'- cGGCCcucgaagCGCuUGGCGCGCAGCagggcuagGCAGg -3'
miRNA:   3'- aCCGGa------GCG-GUCGUGUGUCGa-------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 126701 0.66 0.80951
Target:  5'- aGaUCUCGCCGGUGuCGCugguGCUGCAGa -3'
miRNA:   3'- aCcGGAGCGGUCGU-GUGu---CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 64750 0.66 0.80951
Target:  5'- gUGGCCaagaCGCCGGCcgGCGCGGCaccggGCGa- -3'
miRNA:   3'- -ACCGGa---GCGGUCG--UGUGUCGa----CGUca -5'
13934 5' -59.7 NC_003521.1 + 88024 0.66 0.80951
Target:  5'- cUGGCCUgCGCCAccuGUcCGCAGCUGgucuCGGg -3'
miRNA:   3'- -ACCGGA-GCGGU---CGuGUGUCGAC----GUCa -5'
13934 5' -59.7 NC_003521.1 + 47938 0.66 0.806097
Target:  5'- -uGCCgugUCGUCGGCGCACAGCaucucaggagccgGCGGg -3'
miRNA:   3'- acCGG---AGCGGUCGUGUGUCGa------------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 122495 0.66 0.800935
Target:  5'- cGGCgCucagUCGCCGGCACcCGcGCUcGCAGg -3'
miRNA:   3'- aCCG-G----AGCGGUCGUGuGU-CGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 100125 0.66 0.800935
Target:  5'- gUGGCC--GCCAuGCGC-CAGCUGCu-- -3'
miRNA:   3'- -ACCGGagCGGU-CGUGuGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 214539 0.66 0.800935
Target:  5'- cUGGCCUCcuccuaCCAGCugauGCACAagauGCUGCuGUg -3'
miRNA:   3'- -ACCGGAGc-----GGUCG----UGUGU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 71776 0.66 0.800935
Target:  5'- cGGCCggCGUCGGU-CGCAGCgucGCGGc -3'
miRNA:   3'- aCCGGa-GCGGUCGuGUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 106693 0.66 0.800935
Target:  5'- gUGcGCUUCGCCAGCgACACGGaCUuuCAGa -3'
miRNA:   3'- -AC-CGGAGCGGUCG-UGUGUC-GAc-GUCa -5'
13934 5' -59.7 NC_003521.1 + 84816 0.66 0.800935
Target:  5'- gGGCCgcUCGCUgaaCAaGCGGCUGCAGg -3'
miRNA:   3'- aCCGG--AGCGGuc-GUgUGUCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.